Os07g0679200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF623, plant domain containing protein.
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Os07g0679200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF623, plant domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 550.17 | 1.1 | 3.99 | -2.12 | 0.22 | 0.562 | -1.71 | -6.9 | -0.757 | 19.8 | 55.32 | 100 | -- | -- |
| 559.82 | 1.1 | 4.03 | -2.16 | 0.295 | 2.32 | -0.948 | -- | -0.785 | 19.1 | 57.68 | 113 | -- | -- |
| 557.75 | 1.1 | 4 | -2.09 | 0.246 | 0.568 | -- | -6.37 | -0.766 | 18.1 | 56.31 | 100 | -- | -- |
| 564.15 | 1.11 | 4.03 | -2.08 | 0.244 | 2.59 | -- | -- | -0.775 | 18.6 | 57.98 | 103 | -- | -- |
| 560.88 | 1.1 | 4 | -2.09 | -- | 0.637 | -- | -6.24 | -0.769 | -- | 56.4 | 100 | -- | -- |
| 587.55 | 1.14 | 4.04 | -2.27 | 0.281 | -- | -1.39 | -- | -0.836 | 17.3 | -- | -- | -- | -- |
| 591.97 | 1.14 | 4.04 | -2.27 | 0.281 | -- | -- | -- | -0.841 | 16.2 | -- | -- | -- | -- |
| 567.23 | 1.11 | 4.03 | -2.08 | -- | 2.58 | -- | -- | -0.784 | -- | 57.95 | 101 | -- | -- |
| 674.68 | 1.21 | 3.96 | -- | 0.27 | 3.28 | -- | -- | -0.53 | 18.6 | 57.63 | 97 | -- | -- |
| 596.24 | 1.14 | 4.04 | -2.28 | -- | -- | -- | -- | -0.849 | -- | -- | -- | -- | -- |
| 727.99 | 1.26 | 3.99 | -- | 0.325 | -- | -- | -- | -0.588 | 16 | -- | -- | -- | -- |
| 677.47 | 1.21 | 3.97 | -- | -- | 3.43 | -- | -- | -0.527 | -- | 57.74 | 109 | -- | -- |
| 733.74 | 1.26 | 3.98 | -- | -- | -- | -- | -- | -0.596 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 537.67 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 17 | 537.67 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 33 | 545.91 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 36 | 546.18 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 48 | 546.18 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 60 | 546.20 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 69 | 546.67 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 70 | 546.67 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 88 | 546.98 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 11 |
| 200 | 548.57 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 209 | 548.74 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 237 | 548.74 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 264 | 548.76 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 275 | 548.84 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 302 | 551.28 | wind | 5.0 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 303 | 551.30 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 11 | 2 |
| 313 | 552.42 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 12 | NA |
| 314 | 552.49 | wind | 5.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 320 | 553.40 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 11 | 22 |
| 326 | 553.62 | radiation | 30.0 | 10 | > th | dose independent | rect. | 11 | 2 |
| 329 | 553.70 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 11 | 1 |
| 335 | 554.07 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 336 | 554.07 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 351 | 554.63 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 11 |
| 352 | 554.64 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 11 | 6 |
| 372 | 554.70 | wind | 9.0 | 720 | > th | dose dependent | rect. | 14 | 2 |
| 436 | 555.13 | wind | 9.0 | 270 | < th | dose independent | sin | 11 | NA |
| 437 | 555.13 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 439 | 555.16 | radiation | 40.0 | 10 | < th | dose independent | sin | 18 | NA |
| 440 | 555.17 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 15 | 22 |
| 487 | 555.45 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 489 | 555.46 | wind | 9.0 | 720 | > th | dose independent | rect. | 13 | 3 |
| 565 | 556.01 | wind | 9.0 | 270 | > th | dose independent | sin | 11 | NA |
| 571 | 556.09 | radiation | 40.0 | 10 | > th | dose dependent | sin | 16 | NA |
| 575 | 556.16 | radiation | 40.0 | 90 | > th | dose independent | rect. | 11 | 1 |
| 578 | 556.17 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 581 | 556.20 | wind | 1.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 583 | 556.23 | wind | 9.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 585 | 556.24 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 10 | 6 |
| 628 | 556.35 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 7 | 6 |
| 678 | 556.85 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 14 | 22 |
| 715 | 557.01 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 716 | 557.01 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 767 | 557.24 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 7 |
| 768 | 557.24 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 9 |
| 786 | 557.58 | wind | 9.0 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 788 | 557.65 | wind | 9.0 | 270 | > th | dose independent | rect. | 18 | 16 |
| 789 | 557.66 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 805 | 557.84 | wind | 9.0 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 806 | 557.85 | wind | 9.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 812 | 557.91 | radiation | 10.0 | 10 | > th | dose dependent | sin | 23 | NA |
| 815 | 557.96 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 819 | 558.00 | wind | 9.0 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 822 | 558.03 | radiation | 40.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 850 | 558.15 | humidity | 80.0 | 30 | < th | dose independent | rect. | 11 | 7 |
| 858 | 558.19 | temperature | 15.0 | 90 | > th | dose independent | rect. | 10 | 17 |
| 862 | 558.21 | radiation | 40.0 | 10 | < th | dose independent | rect. | 13 | 23 |
| 875 | 558.34 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 15 | 10 |
| 879 | 558.37 | radiation | 40.0 | 10 | < th | dose independent | no | NA | NA |
| 880 | 558.37 | radiation | 40.0 | 90 | > th | dose dependent | no | NA | NA |
| 918 | 558.37 | wind | 9.0 | 720 | > th | dose dependent | rect. | 1 | 16 |