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Os07g0679000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Potassium transporter 2 (AtPOT2) (AtKUP2) (AtKT2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.36 (0.0283) R2 : 0.499
β1 : -1.35 (0.106) R2dD : 0.195 R2D : 0.0663
β2 : 0.779 (0.0681) R2dC : 0.146 R2C : 0.171
β3 : -1.29 (0.0917) R2dE : 0.234 R2E : 0.163
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.164 (0.0603) R2dN8 : 0.011 R2N8 : -0.000637
σ : 0.528
deviance : 128.43
__
_____
C
peak time of C : 22.5
E
wheather : temperature
threshold : 29.47
memory length : 4256
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.65 0.531 7.31 -0.924 0.784 -1.06 -0.192 -2.06 -0.0956 22.4 29.5 4256 -- --
128.34 0.528 7.36 -1.38 0.79 -1.28 -0.205 -- -0.166 22.5 29.4 4277 -- --
127.8 0.527 7.31 -0.924 0.786 -1.06 -- -2.02 -0.0964 22.4 29.48 4256 -- --
128.43 0.528 7.36 -1.35 0.779 -1.29 -- -- -0.164 22.5 29.47 4256 -- --
164.12 0.597 7.32 -0.885 -- -1.08 -- -1.85 -0.0967 -- 29.4 3935 -- --
184.09 0.636 7.37 -1.01 0.861 -- -0.0633 -- -0.198 22.8 -- -- -- --
184.1 0.635 7.37 -1.01 0.861 -- -- -- -0.197 22.8 -- -- -- --
162.39 0.594 7.37 -1.44 -- -1.48 -- -- -0.265 -- 29 3852 -- --
174 0.614 7.33 -- 0.788 -1.02 -- -- -0.0295 22.4 29.5 4256 -- --
229.95 0.709 7.35 -0.988 -- -- -- -- -0.192 -- -- -- -- --
210.74 0.679 7.34 -- 0.854 -- -- -- -0.0854 22.7 -- -- -- --
209.8 0.675 7.31 -- -- -1.17 -- -- -0.0454 -- 29.35 3919 -- --
255.71 0.746 7.32 -- -- -- -- -- -0.0827 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 124.06 radiation 30.0 4320 < th dose independent rect. 15 17
2 124.60 wind 9.0 43200 < th dose independent rect. 20 10
3 124.88 radiation 30.0 4320 > th dose independent rect. 15 17
4 125.20 radiation 20.0 4320 > th dose dependent rect. 15 17
5 125.32 wind 9.0 43200 > th dose independent rect. 20 10
9 125.96 temperature 25.0 4320 > th dose dependent rect. 22 1
11 126.27 humidity 70.0 14400 < th dose independent rect. 19 12
12 126.31 humidity 70.0 14400 < th dose independent rect. 19 2
24 126.44 humidity 60.0 14400 < th dose dependent rect. 17 2
25 126.48 temperature 30.0 14400 < th dose independent rect. 18 14
26 126.56 temperature 30.0 14400 < th dose independent rect. 18 3
27 126.56 temperature 30.0 14400 < th dose independent rect. 18 5
32 126.59 temperature 30.0 14400 < th dose independent rect. 18 10
36 126.63 wind 9.0 43200 > th dose dependent rect. 20 10
39 126.70 temperature 25.0 4320 > th dose independent rect. 7 1
41 126.74 humidity 60.0 14400 > th dose independent rect. 18 1
56 126.89 temperature 25.0 4320 < th dose independent rect. 7 1
57 126.90 precipitation 0.1 43200 < th dose independent rect. 20 1
58 126.90 precipitation 0.1 43200 < th dose dependent rect. 20 1
60 126.94 precipitation 0.1 43200 > th dose independent rect. 20 1
67 127.33 temperature 25.0 4320 > th dose dependent rect. 18 1
68 127.35 temperature 30.0 1440 < th dose independent rect. 17 19
71 127.45 temperature 30.0 1440 < th dose independent rect. 11 1
73 127.47 temperature 25.0 4320 > th dose dependent rect. 18 5
74 127.48 radiation 20.0 4320 > th dose dependent rect. 15 2
92 127.56 radiation 30.0 4320 < th dose independent rect. 15 4
93 127.58 temperature 30.0 1440 > th dose independent rect. 17 20
97 127.60 radiation 30.0 4320 < th dose independent rect. 15 8
105 127.64 radiation 30.0 4320 < th dose independent rect. 15 13
108 127.66 radiation 30.0 4320 < th dose independent rect. 15 1
120 127.75 temperature 30.0 14400 > th dose dependent rect. 17 16
122 127.77 temperature 25.0 1440 > th dose dependent rect. 4 3
125 127.82 humidity 50.0 14400 > th dose independent rect. 17 3
129 127.86 temperature 30.0 1440 > th dose independent rect. 11 1
131 127.87 humidity 50.0 14400 > th dose independent rect. 17 15
142 127.92 humidity 50.0 14400 > th dose independent rect. 17 6
161 128.02 temperature 30.0 1440 > th dose independent rect. 16 2
172 128.07 temperature 25.0 4320 > th dose dependent rect. 7 2
191 128.10 radiation 10.0 14400 > th dose independent rect. 17 13
194 128.11 temperature 25.0 1440 > th dose dependent rect. 1 8
241 128.22 humidity 50.0 14400 > th dose independent rect. 17 11
271 128.29 humidity 50.0 14400 > th dose independent rect. 17 9
280 128.37 radiation 10.0 14400 > th dose independent rect. 17 1
301 128.48 temperature 30.0 4320 < th dose independent sin 11 NA
335 128.60 temperature 30.0 1440 < th dose independent sin 9 NA
356 128.64 temperature 30.0 1440 < th dose independent rect. 1 11
359 128.67 temperature 30.0 1440 < th dose independent rect. 4 8
361 128.68 wind 5.0 43200 > th dose independent rect. 6 1
362 128.69 temperature 30.0 4320 > th dose independent sin 12 NA
367 128.70 temperature 30.0 4320 < th dose independent rect. 18 23
379 128.73 temperature 30.0 1440 > th dose independent rect. 8 5
413 128.75 temperature 30.0 1440 > th dose independent sin 9 NA
424 128.76 precipitation 0.1 43200 > th dose dependent rect. 17 5
455 128.80 radiation 10.0 14400 > th dose dependent rect. 17 1
468 128.81 radiation 30.0 4320 > th dose independent rect. 15 2
491 128.82 temperature 30.0 4320 < th dose independent rect. 10 9
494 128.82 temperature 30.0 4320 < th dose independent rect. 10 13
496 128.82 humidity 50.0 14400 < th dose independent rect. 16 18
497 128.82 temperature 30.0 4320 < th dose independent rect. 10 22
518 128.83 temperature 30.0 4320 > th dose independent rect. 18 23
520 128.83 temperature 30.0 4320 < th dose independent rect. 13 23
540 128.86 temperature 30.0 4320 < th dose independent rect. 6 13
547 128.87 temperature 30.0 4320 > th dose independent rect. 10 9
562 128.87 temperature 30.0 4320 < th dose independent rect. 3 16
572 128.87 temperature 30.0 4320 < th dose independent rect. 3 18
587 128.88 temperature 30.0 4320 < th dose independent no NA NA
663 128.90 temperature 30.0 1440 > th dose dependent rect. 12 1
723 128.95 precipitation 0.1 43200 > th dose dependent rect. 20 2
756 128.99 temperature 30.0 4320 > th dose independent rect. 13 23
758 129.00 temperature 30.0 4320 > th dose independent no NA NA
877 129.04 humidity 50.0 14400 < th dose independent rect. 16 1
906 129.10 radiation 10.0 14400 < th dose independent rect. 16 14