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Os07g0678600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0292) R2 : 0.615
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.708 (0.0777) R2dC : 0.0738 R2C : 0.137
β3 : -1.26 (0.0541) R2dE : 0.476 R2E : 0.54
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0657 (0.0615) R2dN8 : 0.00196 R2N8 : 0.000451
σ : 0.549
deviance : 138.71
__
_____
C
peak time of C : 6.43
E
wheather : radiation
threshold : 0.02
memory length : 16
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.7 0.533 11.6 0.511 0.731 -1.19 -0.536 0.519 -0.0449 6.9 0.06 19 -- --
130.04 0.531 11.6 0.535 0.723 -1.18 -0.968 -- -0.0445 7.08 0.05937 18 -- --
129.29 0.53 11.6 0.491 0.722 -1.22 -- 0.652 -0.0527 6.69 0.01997 18 -- --
131.86 0.535 11.6 0.505 0.691 -1.25 -- -- -0.0513 6.49 0.04882 16 -- --
154.7 0.582 11.6 0.529 -- -1.32 -- 0.718 -0.106 -- 0.04 18 -- --
159.58 0.592 11.5 0.687 1.75 -- -1.02 -- -0.00427 10.1 -- -- -- --
163.68 0.599 11.5 0.647 1.75 -- -- -- -0.00636 10.2 -- -- -- --
157.99 0.585 11.6 0.495 -- -1.25 -- -- -0.0525 -- 0.03877 16 -- --
138.71 0.549 11.6 -- 0.708 -1.26 -- -- -0.0657 6.43 0.02 16 -- --
349.13 0.873 11.6 0.623 -- -- -- -- -0.00934 -- -- -- -- --
174.73 0.618 11.6 -- 1.75 -- -- -- -0.0785 10.1 -- -- -- --
163.57 0.596 11.6 -- -- -1.33 -- -- -0.0879 -- 0.04 13 -- --
359.38 0.885 11.6 -- -- -- -- -- -0.0785 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 123.83 radiation 1.0 10 < th dose dependent sin 12 NA
2 124.89 radiation 1.0 90 < th dose dependent rect. 6 22
5 125.78 radiation 1.0 90 < th dose independent rect. 6 22
11 126.62 radiation 1.0 90 < th dose dependent rect. 11 17
15 126.84 radiation 1.0 10 > th dose independent sin 12 NA
20 127.63 wind 1.0 90 > th dose independent rect. 23 15
21 127.66 radiation 1.0 90 < th dose independent rect. 11 17
27 128.49 radiation 1.0 10 < th dose independent sin 12 NA
32 129.17 radiation 1.0 10 > th dose independent rect. 17 13
37 129.44 radiation 1.0 10 < th dose dependent rect. 19 21
40 129.79 radiation 1.0 10 > th dose independent rect. 15 15
43 130.00 atmosphere 1000.0 10 > th dose independent rect. 5 14
45 130.17 radiation 1.0 90 < th dose independent rect. 17 11
48 130.35 radiation 1.0 10 < th dose dependent rect. 19 19
50 130.38 wind 3.0 270 < th dose dependent rect. 4 1
52 130.59 wind 3.0 90 < th dose dependent rect. 4 4
58 131.01 wind 7.0 90 < th dose independent rect. 18 10
61 131.11 precipitation 0.1 90 < th dose independent rect. 18 10
62 131.11 precipitation 0.1 90 < th dose dependent rect. 18 10
63 131.13 wind 1.0 90 > th dose independent rect. 18 21
66 131.20 temperature 10.0 270 > th dose dependent rect. 6 7
68 131.26 radiation 1.0 10 < th dose dependent rect. 19 17
71 131.40 wind 7.0 10 < th dose independent rect. 19 10
74 131.44 radiation 1.0 10 < th dose dependent rect. 19 13
83 131.70 radiation 1.0 10 < th dose dependent rect. 19 11
88 131.86 radiation 40.0 90 < th dose independent rect. 4 14
96 132.01 temperature 10.0 90 > th dose independent rect. 18 10
97 132.01 humidity 50.0 90 > th dose independent rect. 18 10
98 132.01 radiation 20.0 90 < th dose independent rect. 18 10
101 132.01 temperature 10.0 90 > th dose independent rect. 4 14
102 132.01 atmosphere 1015.0 90 < th dose independent rect. 4 14
104 132.08 atmosphere 995.0 90 > th dose independent rect. 18 10
112 132.39 precipitation 0.1 90 < th dose independent rect. 4 14
113 132.39 precipitation 0.1 90 < th dose dependent rect. 4 14
121 132.54 temperature 10.0 10 > th dose independent rect. 19 10
122 132.54 temperature 30.0 10 < th dose independent rect. 19 10
123 132.54 humidity 50.0 10 > th dose independent rect. 19 10
125 132.54 atmosphere 995.0 10 > th dose independent rect. 19 10
126 132.54 radiation 1.0 10 < th dose independent rect. 19 10
131 132.54 temperature 10.0 10 > th dose independent rect. 5 14
133 132.54 atmosphere 1015.0 10 < th dose independent rect. 5 14
134 132.54 temperature 10.0 30 > th dose dependent rect. 19 9
139 132.59 precipitation 0.1 10 < th dose independent rect. 5 14
140 132.59 precipitation 0.1 10 < th dose dependent rect. 5 14
144 132.66 wind 9.0 90 < th dose independent rect. 4 14
170 132.99 wind 9.0 10 < th dose independent rect. 5 14
174 133.07 wind 1.0 270 > th dose independent rect. 6 7
179 133.23 radiation 1.0 10 < th dose independent rect. 19 21
181 133.30 temperature 15.0 270 > th dose independent rect. 13 17
188 133.42 humidity 50.0 90 > th dose independent rect. 6 22
190 133.44 wind 1.0 90 < th dose independent rect. 4 14
210 133.69 wind 1.0 90 > th dose independent sin 4 NA
220 133.88 wind 1.0 90 < th dose independent rect. 4 9
221 133.88 radiation 1.0 10 < th dose independent rect. 19 19
223 133.90 atmosphere 1015.0 30 < th dose independent rect. 19 9
225 133.91 humidity 50.0 270 > th dose independent rect. 6 7
227 133.91 humidity 50.0 90 > th dose independent rect. 8 20
241 133.94 temperature 10.0 10 > th dose dependent rect. 5 1
255 134.09 wind 1.0 90 < th dose independent rect. 4 4
256 134.09 wind 1.0 90 < th dose dependent rect. 4 14
259 134.11 wind 1.0 90 < th dose dependent rect. 4 12
266 134.20 temperature 15.0 270 > th dose dependent rect. 19 17
271 134.29 atmosphere 1010.0 10 < th dose independent rect. 5 3
273 134.31 temperature 10.0 270 > th dose dependent rect. 18 19
279 134.38 wind 1.0 90 < th dose dependent rect. 4 10
287 134.45 wind 1.0 90 < th dose independent rect. 4 7
288 134.47 radiation 40.0 10 < th dose independent rect. 5 14
298 134.59 wind 9.0 270 < th dose independent rect. 6 7
309 134.69 temperature 10.0 270 > th dose independent rect. 6 7
310 134.69 atmosphere 995.0 270 > th dose independent rect. 6 7
311 134.69 atmosphere 1015.0 270 < th dose independent rect. 6 7
315 134.71 precipitation 0.1 270 < th dose independent rect. 6 7
317 134.71 radiation 1.0 10 < th dose independent rect. 19 17
320 134.71 precipitation 0.1 270 < th dose dependent rect. 6 7
326 134.74 temperature 15.0 270 > th dose dependent rect. 18 7
339 134.86 humidity 50.0 10 > th dose independent rect. 6 23
342 134.88 wind 9.0 270 < th dose independent rect. 13 17
343 134.88 wind 7.0 10 < th dose dependent rect. 5 1
348 134.90 radiation 1.0 10 < th dose independent rect. 19 13
352 134.91 temperature 10.0 270 > th dose dependent rect. 21 15
359 135.01 wind 3.0 10 < th dose dependent rect. 5 3
363 135.05 wind 9.0 90 < th dose dependent rect. 4 14
376 135.12 humidity 50.0 10 > th dose dependent rect. 5 1
398 135.35 wind 7.0 10 < th dose independent rect. 5 1
400 135.35 temperature 10.0 10 > th dose independent rect. 5 1
402 135.35 temperature 30.0 10 < th dose independent rect. 5 1
403 135.35 humidity 50.0 10 > th dose independent rect. 5 1
406 135.35 atmosphere 995.0 10 > th dose independent rect. 5 1
407 135.35 atmosphere 1010.0 10 < th dose independent rect. 5 1
409 135.35 radiation 20.0 10 < th dose independent rect. 5 1
412 135.35 temperature 10.0 10 > th dose independent rect. 6 23
415 135.37 wind 9.0 90 < th dose dependent rect. 18 10
422 135.43 precipitation 0.1 10 < th dose independent rect. 5 1
425 135.43 precipitation 0.1 10 < th dose dependent rect. 5 1
457 135.57 atmosphere 1010.0 90 < th dose independent rect. 4 3
470 135.60 humidity 70.0 90 > th dose dependent rect. 4 3
475 135.63 radiation 40.0 90 < th dose dependent rect. 4 14
482 135.65 wind 9.0 10 < th dose independent rect. 6 23
485 135.66 atmosphere 995.0 10 > th dose independent rect. 6 23
503 135.76 wind 1.0 90 > th dose independent rect. 6 23
504 135.76 humidity 80.0 270 > th dose dependent rect. 4 1
509 135.79 humidity 90.0 90 > th dose independent rect. 4 3
511 135.79 radiation 40.0 10 < th dose dependent rect. 5 1
515 135.81 temperature 10.0 90 > th dose dependent rect. 4 2
517 135.81 temperature 15.0 90 > th dose dependent rect. 23 14
519 135.82 radiation 1.0 10 < th dose dependent no NA NA
523 135.82 radiation 1.0 10 < th dose dependent rect. 11 21
529 135.82 radiation 1.0 10 < th dose dependent rect. 13 23
530 135.82 radiation 1.0 10 < th dose dependent rect. 15 23
544 135.90 atmosphere 1015.0 90 < th dose dependent rect. 4 3
564 135.98 atmosphere 995.0 270 > th dose independent rect. 13 17
571 136.05 radiation 1.0 10 < th dose dependent rect. 13 19
606 136.18 precipitation 0.1 10 < th dose independent rect. 6 23
608 136.18 precipitation 0.1 10 < th dose dependent rect. 6 23
609 136.19 precipitation 0.1 90 < th dose independent rect. 6 22
613 136.19 precipitation 0.1 90 < th dose dependent rect. 6 22
624 136.27 precipitation 0.1 270 < th dose independent rect. 13 17
625 136.27 precipitation 0.1 270 < th dose dependent rect. 13 17
628 136.29 atmosphere 1000.0 30 > th dose independent rect. 4 19
649 136.44 wind 1.0 90 > th dose independent rect. 18 10
660 136.50 atmosphere 1005.0 10 > th dose independent rect. 5 1
689 136.59 atmosphere 995.0 10 > th dose dependent rect. 5 1
690 136.59 radiation 40.0 10 < th dose dependent rect. 5 14
703 136.65 wind 1.0 43200 < th dose dependent rect. 9 2
708 136.69 wind 9.0 90 < th dose independent rect. 6 22
709 136.69 atmosphere 1015.0 10 < th dose independent rect. 6 23
715 136.73 radiation 1.0 10 > th dose independent rect. 5 1
738 136.76 wind 9.0 90 < th dose independent rect. 4 2
739 136.76 temperature 10.0 90 > th dose independent rect. 4 2
741 136.76 temperature 30.0 90 < th dose independent rect. 4 2
742 136.76 humidity 50.0 90 > th dose independent rect. 4 2
745 136.76 atmosphere 995.0 90 > th dose independent rect. 4 2
748 136.76 radiation 20.0 90 < th dose independent rect. 4 2
753 136.76 temperature 10.0 90 > th dose independent rect. 6 22
760 136.79 precipitation 0.1 90 < th dose independent rect. 4 2
764 136.79 precipitation 0.1 90 < th dose dependent rect. 4 2
778 136.85 wind 1.0 90 < th dose independent sin 3 NA
780 136.85 radiation 1.0 10 < th dose dependent rect. 15 21
805 136.98 radiation 40.0 90 < th dose dependent rect. 4 2
810 137.00 wind 1.0 90 < th dose dependent rect. 4 21
813 137.03 radiation 1.0 270 > th dose independent rect. 6 7
816 137.03 radiation 1.0 10 < th dose dependent rect. 23 23
822 137.07 radiation 1.0 10 < th dose dependent rect. 15 17
840 137.15 atmosphere 995.0 90 > th dose independent rect. 6 22
843 137.17 atmosphere 1015.0 10 < th dose dependent rect. 8 6
849 137.20 wind 3.0 10 < th dose independent rect. 5 3
871 137.28 radiation 1.0 10 < th dose dependent rect. 21 23
882 137.34 wind 1.0 90 < th dose dependent sin 3 NA
907 137.39 atmosphere 1015.0 270 < th dose dependent rect. 7 6
928 137.47 radiation 30.0 270 < th dose dependent rect. 15 11
931 137.49 atmosphere 1015.0 270 < th dose dependent rect. 4 1
970 137.62 humidity 50.0 10 > th dose dependent rect. 5 3