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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0678400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.64 (0.0533) R2 : 0.273
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.54 (0.141) R2dC : 0.2 R2C : 0.128
β3 : 4.52 (0.504) R2dE : 0.135 R2E : 0.0705
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.185 (0.112) R2dN8 : 0.00558 R2N8 : 0.00639
σ : 1
deviance : 460.74
__
_____
C
peak time of C : 4.74
E
wheather : atmosphere
threshold : 1007
memory length : 33
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 0.85

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
445.77 0.992 3.62 0.501 1.51 3.87 2.11 7.6 -0.134 4.73 1008 34 18 0.835
445.96 0.984 3.62 0.394 1.51 4.59 2.11 -- -0.156 4.72 1007 33 18 0.833
456.44 0.995 3.63 0.397 1.54 4.57 -- -0.819 -0.121 4.76 1007 34 18 0.833
456.42 0.995 3.63 0.405 1.53 4.48 -- -- -0.141 4.75 1007 33 18 0.848
552.79 1.1 3.62 0.524 -- 4.93 -- -0.199 -0.0497 -- 1005 33 18.3 0.511
527.87 1.08 3.65 0.497 1.26 -- 1.58 -- -0.203 4.29 -- -- -- --
534.78 1.08 3.65 0.483 1.27 -- -- -- -0.212 4.34 -- -- -- --
551.77 1.09 3.68 0.476 -- 5.26 -- -- -0.136 -- 1005 33 18.3 0.54
460.74 1 3.64 -- 1.54 4.52 -- -- -0.185 4.74 1007 33 18 0.85
621.45 1.16 3.66 0.533 -- -- -- -- -0.178 -- -- -- -- --
540.92 1.09 3.66 -- 1.28 -- -- -- -0.265 4.33 -- -- -- --
558 1.1 3.68 -- -- 5.39 -- -- -0.136 -- 1005 33 18.3 0.54
628.94 1.17 3.67 -- -- -- -- -- -0.237 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 448.21 temperature 30.0 30 > th dose independent rect. 18 1
31 459.59 humidity 70.0 30 < th dose independent rect. 18 1
32 463.16 atmosphere 1010.0 30 < th dose dependent rect. 18 1
33 465.52 radiation 1.0 10 < th dose independent rect. 18 1
34 465.67 temperature 25.0 30 > th dose dependent rect. 18 1
35 466.09 humidity 80.0 30 < th dose dependent rect. 18 1
40 467.41 precipitation 0.1 30 < th dose independent rect. 19 23
41 467.41 precipitation 0.1 30 < th dose dependent rect. 19 23
45 469.65 radiation 1.0 10 < th dose dependent rect. 18 1
50 471.88 wind 7.0 30 < th dose independent rect. 18 1
54 472.10 wind 9.0 30 < th dose dependent rect. 18 1
72 472.40 wind 1.0 30 > th dose independent rect. 18 1
73 472.40 temperature 10.0 30 > th dose independent rect. 18 1
75 472.40 humidity 50.0 30 > th dose independent rect. 18 1
76 472.40 atmosphere 1010.0 30 < th dose independent rect. 18 1
81 472.40 precipitation 0.1 30 < th dose independent rect. 18 1
82 472.40 temperature 10.0 30 > th dose independent rect. 19 23
83 472.40 precipitation 0.1 30 < th dose dependent rect. 18 1
85 472.73 wind 9.0 30 < th dose independent rect. 19 23
86 472.76 atmosphere 1005.0 30 > th dose independent rect. 18 1
89 473.06 atmosphere 995.0 30 > th dose independent rect. 18 1
95 474.11 wind 1.0 30 > th dose dependent rect. 18 1
122 476.04 humidity 60.0 90 > th dose independent rect. 5 22
124 476.13 humidity 60.0 270 > th dose independent rect. 5 19
144 477.53 temperature 30.0 90 < th dose independent rect. 17 10
146 477.65 precipitation 0.1 270 < th dose independent rect. 19 14
147 477.65 precipitation 0.1 270 < th dose dependent rect. 19 14
149 477.86 atmosphere 995.0 30 > th dose dependent rect. 18 1
151 478.29 atmosphere 995.0 270 > th dose dependent rect. 24 5
152 478.32 radiation 10.0 30 < th dose dependent rect. 3 16
157 478.64 temperature 30.0 10 < th dose independent rect. 18 9
161 479.03 precipitation 0.1 30 < th dose independent rect. 19 8
162 479.03 precipitation 0.1 30 < th dose dependent rect. 19 8
174 479.77 atmosphere 995.0 30 > th dose independent rect. 19 23
177 480.11 precipitation 0.1 270 < th dose independent rect. 5 19
178 480.11 precipitation 0.1 270 < th dose dependent rect. 5 19
185 480.63 wind 7.0 90 < th dose independent rect. 19 8
189 480.89 radiation 40.0 43200 < th dose dependent rect. 19 9
193 481.16 humidity 60.0 270 > th dose independent rect. 16 8
194 481.39 atmosphere 1000.0 90 > th dose dependent rect. 3 2
199 481.54 temperature 10.0 90 > th dose independent rect. 19 8
201 481.54 humidity 50.0 90 > th dose independent rect. 19 8
203 481.54 atmosphere 995.0 90 > th dose independent rect. 19 8
204 481.54 radiation 1.0 90 < th dose independent rect. 19 8
209 481.54 temperature 10.0 90 > th dose independent rect. 3 16
210 481.54 atmosphere 1015.0 90 < th dose independent rect. 3 16
211 481.54 radiation 1.0 90 < th dose dependent rect. 19 8
239 481.72 radiation 1.0 1440 < th dose dependent rect. 19 9
240 481.73 radiation 1.0 90 < th dose dependent rect. 3 3
241 481.76 wind 9.0 30 < th dose independent rect. 3 16
243 481.84 radiation 1.0 90 < th dose independent rect. 3 3
270 482.14 temperature 10.0 270 > th dose dependent rect. 24 5
302 482.70 humidity 80.0 270 > th dose independent rect. 24 5
307 482.88 wind 9.0 10 < th dose dependent rect. 19 8
314 483.04 radiation 1.0 30 < th dose independent rect. 3 16
316 483.08 wind 1.0 90 > th dose independent rect. 3 3
317 483.10 humidity 50.0 14400 > th dose independent rect. 19 9
318 483.12 wind 7.0 270 < th dose independent rect. 5 9
321 483.15 precipitation 0.1 270 < th dose independent rect. 4 21
322 483.15 precipitation 0.1 270 < th dose dependent rect. 4 21
323 483.22 atmosphere 1000.0 270 > th dose independent rect. 24 5
324 483.23 temperature 15.0 270 > th dose independent rect. 14 15
335 483.49 radiation 1.0 90 < th dose dependent rect. 3 8
342 483.63 temperature 10.0 270 > th dose independent rect. 5 9
343 483.63 atmosphere 995.0 270 > th dose independent rect. 5 9
344 483.63 atmosphere 1015.0 270 < th dose independent rect. 5 9
349 483.72 wind 9.0 270 < th dose independent rect. 14 15
350 483.74 precipitation 0.1 270 < th dose independent rect. 5 9
352 483.74 precipitation 0.1 270 < th dose dependent rect. 5 9
356 483.80 radiation 40.0 270 < th dose independent rect. 19 14
359 483.82 temperature 10.0 1440 > th dose independent rect. 19 9
362 483.82 temperature 30.0 1440 < th dose independent rect. 19 9
366 483.82 humidity 50.0 1440 > th dose independent rect. 19 9
368 483.82 atmosphere 995.0 1440 > th dose independent rect. 19 9
369 483.82 radiation 1.0 1440 < th dose independent rect. 19 9
389 483.82 temperature 10.0 1440 > th dose independent rect. 4 15
410 483.89 radiation 1.0 270 < th dose dependent rect. 24 6
413 483.94 atmosphere 1010.0 270 < th dose independent rect. 24 5
415 483.95 radiation 1.0 270 < th dose independent rect. 24 5
420 483.97 wind 9.0 270 < th dose independent rect. 24 5
421 483.97 temperature 15.0 270 > th dose independent rect. 24 5
429 483.98 temperature 30.0 270 < th dose independent rect. 24 5
430 483.98 humidity 50.0 270 > th dose independent rect. 24 5
438 483.98 temperature 10.0 270 > th dose independent rect. 5 19
439 483.98 precipitation 0.1 270 < th dose independent rect. 3 23
440 483.98 precipitation 0.1 270 < th dose dependent rect. 3 23
442 484.01 wind 1.0 270 > th dose independent rect. 24 5
453 484.31 wind 9.0 270 < th dose independent rect. 5 19
459 484.40 wind 7.0 270 < th dose independent rect. 19 14
464 484.56 radiation 1.0 270 < th dose dependent rect. 24 9
471 484.64 temperature 10.0 90 > th dose dependent rect. 3 2
472 484.66 radiation 1.0 90 < th dose dependent rect. 6 21
476 484.73 radiation 1.0 90 < th dose dependent rect. 17 10
478 484.74 precipitation 0.1 270 < th dose independent rect. 17 7
479 484.74 precipitation 0.1 270 < th dose dependent rect. 17 7
481 484.79 wind 1.0 90 > th dose independent rect. 3 16
487 484.91 humidity 80.0 90 > th dose independent rect. 3 2
492 485.04 humidity 50.0 270 > th dose dependent rect. 24 5
496 485.10 radiation 1.0 90 < th dose independent rect. 3 8
502 485.15 atmosphere 995.0 270 > th dose independent rect. 5 19
518 485.17 temperature 30.0 90 < th dose independent rect. 5 22
531 485.23 temperature 30.0 30 > th dose independent sin 12 NA
541 485.37 atmosphere 995.0 90 > th dose independent rect. 5 22
546 485.40 radiation 1.0 90 < th dose dependent rect. 13 14
548 485.40 radiation 1.0 90 < th dose dependent rect. 9 18
578 485.53 temperature 10.0 90 > th dose dependent rect. 19 7
624 485.67 radiation 1.0 90 < th dose dependent rect. 3 14
626 485.74 humidity 80.0 270 > th dose independent rect. 1 3
646 486.01 radiation 10.0 30 < th dose dependent rect. 24 19
647 486.02 precipitation 0.1 270 < th dose independent rect. 24 5
648 486.02 wind 9.0 270 < th dose dependent rect. 24 5
649 486.02 precipitation 0.1 270 < th dose dependent rect. 24 5
653 486.11 precipitation 0.1 30 < th dose independent rect. 3 16
654 486.11 precipitation 0.1 30 < th dose dependent rect. 3 16
663 486.32 wind 9.0 90 < th dose independent rect. 3 2
664 486.32 temperature 10.0 90 > th dose independent rect. 3 2
666 486.32 temperature 30.0 90 < th dose independent rect. 3 2
667 486.32 humidity 50.0 90 > th dose independent rect. 3 2
670 486.32 atmosphere 995.0 90 > th dose independent rect. 3 2
671 486.32 atmosphere 1010.0 90 < th dose independent rect. 3 2
673 486.32 radiation 20.0 90 < th dose independent rect. 3 2
676 486.32 temperature 10.0 90 > th dose independent rect. 5 22
680 486.37 radiation 40.0 90 < th dose dependent rect. 3 2
704 486.62 wind 9.0 90 < th dose independent rect. 5 22
721 486.79 radiation 10.0 270 < th dose dependent rect. 17 7
722 486.79 wind 9.0 90 < th dose dependent rect. 6 21
733 486.93 radiation 1.0 270 < th dose dependent sin 6 NA
734 486.94 humidity 50.0 90 > th dose dependent rect. 3 2
747 487.02 wind 9.0 10 < th dose dependent rect. 6 21
753 487.07 atmosphere 1005.0 90 > th dose independent rect. 3 2
826 487.34 radiation 1.0 270 < th dose independent rect. 24 9
834 487.36 atmosphere 1010.0 10 < th dose independent rect. 3 4
839 487.38 wind 1.0 270 > th dose independent rect. 10 9
860 487.55 temperature 30.0 30 < th dose independent sin 12 NA
864 487.59 humidity 50.0 270 > th dose independent rect. 5 9
867 487.61 radiation 1.0 90 < th dose independent rect. 17 10
871 487.63 wind 9.0 270 < th dose independent rect. 9 10
875 487.64 temperature 10.0 270 > th dose independent rect. 9 10
876 487.64 atmosphere 1015.0 270 < th dose independent rect. 9 10
877 487.64 temperature 10.0 270 > th dose independent rect. 19 14
878 487.64 humidity 50.0 270 > th dose independent rect. 19 14
879 487.64 atmosphere 995.0 270 > th dose independent rect. 19 14
903 487.84 precipitation 0.1 270 < th dose independent rect. 19 4
905 487.84 precipitation 0.1 270 < th dose dependent rect. 19 4
907 487.85 radiation 1.0 270 < th dose independent rect. 5 19
908 487.86 radiation 1.0 90 < th dose dependent sin 3 NA
918 487.93 radiation 1.0 270 < th dose independent rect. 7 17
925 487.97 humidity 50.0 90 > th dose dependent rect. 6 21
928 488.00 humidity 50.0 270 > th dose dependent rect. 1 3
952 488.06 atmosphere 995.0 30 > th dose independent rect. 3 16
965 488.14 wind 9.0 270 < th dose dependent rect. 5 9
970 488.23 radiation 40.0 270 < th dose dependent rect. 5 19