Os07g0677900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF827, plant family protein.
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Os07g0677900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF827, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 344.86 | 0.873 | 3.93 | -0.0612 | 0.188 | 4.42 | -1 | 1.25 | -0.146 | 4.84 | 28.92 | 406 | 4.15 | 6.42 |
| 344.32 | 0.864 | 3.95 | -0.0314 | 0.138 | 4.36 | -1.45 | -- | -0.153 | 2.69 | 29.45 | 413 | 3.83 | 6.8 |
| 346.56 | 0.867 | 3.94 | -0.0657 | 0.203 | 4.31 | -- | 1.29 | -0.167 | 4.69 | 29.47 | 410 | 4.13 | 6.43 |
| 349.94 | 0.871 | 3.93 | 0.0542 | 0.198 | 4.25 | -- | -- | -0.136 | 4.58 | 29.63 | 411 | 4.08 | 6.48 |
| 347.73 | 0.868 | 3.94 | -0.0844 | -- | 4.25 | -- | 1.19 | -0.173 | -- | 29.56 | 401 | 4 | 6.42 |
| 487.44 | 1.04 | 3.97 | -0.463 | 1.94 | -- | 0.172 | -- | -0.551 | 10.3 | -- | -- | -- | -- |
| 487.56 | 1.03 | 3.97 | -0.456 | 1.94 | -- | -- | -- | -0.551 | 10.3 | -- | -- | -- | -- |
| 350.13 | 0.871 | 3.93 | 0.00954 | -- | 4.12 | -- | -- | -0.149 | -- | 29.27 | 434 | 3.83 | 5.88 |
| 349.57 | 0.871 | 3.92 | -- | 0.152 | 4.09 | -- | -- | -0.137 | 4.14 | 29.84 | 417 | 3.95 | 6.47 |
| 717.13 | 1.25 | 4.02 | -0.485 | -- | -- | -- | -- | -0.556 | -- | -- | -- | -- | -- |
| 493.04 | 1.04 | 3.96 | -- | 1.94 | -- | -- | -- | -0.5 | 10.3 | -- | -- | -- | -- |
| 350.13 | 0.871 | 3.93 | -- | -- | 4.12 | -- | -- | -0.151 | -- | 29.27 | 434 | 3.83 | 5.89 |
| 723.35 | 1.26 | 4.01 | -- | -- | -- | -- | -- | -0.502 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 360.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 13 | 372.49 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 18 | 374.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 19 | 374.50 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 34 | 377.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 40 | 377.30 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 62 | 379.05 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 88 | 380.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 97 | 381.50 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 126 | 383.05 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 161 | 384.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 170 | 384.88 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 178 | 385.39 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 15 |
| 183 | 385.51 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 199 | 386.22 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 5 |
| 218 | 387.13 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 233 | 387.43 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 237 | 387.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 247 | 387.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 273 | 388.59 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 2 |
| 287 | 388.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 368 | 390.99 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 720 | 399.59 | temperature | 15 | 270 | > th | dose dependent | sin | 3 | NA |