Os07g0677600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cationic peroxidase.
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Os07g0677600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cationic peroxidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 857.07 | 1.38 | 6.45 | 0.221 | 7.89 | 6.89 | 2.76 | -2.23 | 0.837 | 20 | 71 | 717 | 15 | 13 |
| 862.44 | 1.37 | 6.46 | 0.229 | 7.9 | 7 | 3.16 | -- | 0.81 | 19.9 | 71.16 | 721 | 15.2 | 12.6 |
| 875 | 1.38 | 6.48 | 0.134 | 7.92 | 6.91 | -- | -3.21 | 0.825 | 20 | 71.23 | 722 | 15.3 | 12.7 |
| 889.78 | 1.39 | 6.47 | 0.131 | 7.99 | 6.95 | -- | -- | 0.742 | 20 | 72.12 | 714 | 15.6 | 12.4 |
| 1158.46 | 1.59 | 6.17 | 0.633 | -- | 7.23 | -- | -2.58 | 1.01 | -- | 48.99 | 3081 | 14.9 | 13.1 |
| 1081.32 | 1.54 | 6.35 | 0.0181 | 6.23 | -- | 1.39 | -- | 0.946 | 22.7 | -- | -- | -- | -- |
| 1089.2 | 1.55 | 6.35 | -0.0396 | 6.22 | -- | -- | -- | 0.94 | 22.7 | -- | -- | -- | -- |
| 1052.8 | 1.51 | 6.24 | 0.312 | -- | 6.77 | -- | -- | 0.78 | -- | 48.92 | 3137 | 14.7 | 12.4 |
| 879.7 | 1.38 | 6.48 | -- | 8.08 | 7.06 | -- | -- | 0.738 | 19.9 | 74.96 | 690 | 15.8 | 12 |
| 3481.16 | 2.76 | 6.19 | 0.0835 | -- | -- | -- | -- | 0.976 | -- | -- | -- | -- | -- |
| 1089.25 | 1.54 | 6.35 | -- | 6.22 | -- | -- | -- | 0.945 | 22.7 | -- | -- | -- | -- |
| 1054.9 | 1.51 | 6.24 | -- | -- | 6.79 | -- | -- | 0.743 | -- | 48.79 | 3136 | 14.7 | 12.5 |
| 3481.35 | 2.75 | 6.19 | -- | -- | -- | -- | -- | 0.967 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 859.75 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 13 |
| 8 | 874.52 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 10 | 875.48 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 16 | 878.32 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 24 | 879.82 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 39 | 882.37 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 4 |
| 49 | 884.00 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 5 |
| 66 | 886.39 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 17 |
| 75 | 887.61 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 93 | 889.08 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 98 | 889.23 | humidity | 70.0 | 720 | > th | dose independent | sin | 14 | NA |
| 160 | 897.49 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 169 | 898.04 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 170 | 898.12 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 180 | 898.92 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 186 | 899.53 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 187 | 899.65 | humidity | 50.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 201 | 900.84 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 211 | 901.55 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 228 | 902.51 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 231 | 902.71 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 2 | 19 |
| 232 | 902.71 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 242 | 902.78 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 284 | 902.97 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 288 | 902.99 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 334 | 903.56 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 365 | 903.97 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 4 | 12 |
| 374 | 904.10 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 377 | 904.13 | humidity | 70.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 438 | 905.18 | humidity | 70.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 476 | 905.67 | humidity | 70.0 | 1440 | < th | dose independent | no | NA | NA |
| 603 | 906.60 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 654 | 907.88 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 698 | 908.46 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 1 | NA |
| 767 | 909.87 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 788 | 910.58 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 16 | 10 |
| 836 | 911.70 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 3 | NA |
| 849 | 911.84 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 19 |
| 860 | 912.05 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 929 | 913.10 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 18 | 20 |
| 957 | 913.63 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 971 | 913.78 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 997 | 914.24 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |