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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0677500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase precursor (EC 1.11.1.7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.77 (0.105) R2 : 0.348
β1 : 1.77 (0.397) R2dD : 0.0298 R2D : -0.036
β2 : 3.02 (0.248) R2dC : 0.207 R2C : 0.166
β3 : -3.54 (0.38) R2dE : 0.143 R2E : 0.031
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.6 (0.228) R2dN8 : 0.096 R2N8 : 0.0217
σ : 1.94
deviance : 1741.3
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_____
C
peak time of C : 0.771
E
wheather : temperature
threshold : 19
memory length : 1447
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.9
open length of G : 1.03

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1731.35 1.95 6.75 1.99 2.97 -3.35 1.52 1.29 1.61 0.855 20.4 1449 16.9 0.95
1732.82 1.94 6.75 1.74 3.01 -3.49 1.69 -- 1.63 0.87 20.1 1450 16.8 1.01
1740.64 1.94 6.75 1.99 2.96 -3.42 -- 1.51 1.63 0.789 20.21 1449 16.8 0.95
1741.3 1.94 6.77 1.77 3.02 -3.54 -- -- 1.6 0.771 19 1447 16.9 1.03
2283.46 2.23 6.72 2.05 -- -3.67 -- 1.91 1.62 -- 20.3 1462 16.8 0.88
2065.28 2.13 6.89 0.703 2.82 -- 1.31 -- 1.06 0.789 -- -- -- --
2072.52 2.13 6.9 0.655 2.82 -- -- -- 1.06 0.736 -- -- -- --
2284.6 2.23 6.78 1.69 -- -3.85 -- -- 1.5 -- 18.75 1462 16.7 0.95
1806.03 1.98 6.87 -- 2.97 -3.03 -- -- 1.27 0.821 20.36 1452 16.9 0.908
2569.11 2.37 6.85 0.757 -- -- -- -- 1.11 -- -- -- -- --
2083.82 2.14 6.92 -- 2.83 -- -- -- 0.985 0.747 -- -- -- --
2355.12 2.26 6.82 -- -- -2.75 -- -- 1.31 -- 20.52 1455 16.8 0.965
2584.21 2.37 6.87 -- -- -- -- -- 1.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1735.27 temperature 20 1440 > th dose dependent rect. 17 1
5 1745.65 humidity 70 720 > th dose independent rect. 17 14
10 1751.35 radiation 10 1440 < th dose independent rect. 17 13
21 1757.48 radiation 10 1440 < th dose independent rect. 17 7
23 1758.03 temperature 20 1440 > th dose dependent rect. 10 9
36 1759.15 temperature 20 720 > th dose dependent rect. 16 18
49 1760.10 radiation 10 1440 < th dose independent rect. 17 10
64 1761.14 humidity 70 720 > th dose independent rect. 17 4
72 1761.61 temperature 20 1440 > th dose dependent sin 20 NA
89 1762.70 humidity 70 720 > th dose independent rect. 17 6
101 1763.64 wind 7 43200 > th dose dependent rect. 13 21
206 1768.40 wind 5 43200 > th dose independent rect. 13 19
221 1768.91 wind 5 43200 < th dose independent rect. 13 19
223 1768.93 temperature 10 720 > th dose dependent rect. 16 17
285 1770.48 wind 9 43200 > th dose independent rect. 13 21
292 1770.63 wind 9 43200 < th dose independent rect. 13 21
299 1770.75 radiation 1 1440 > th dose dependent rect. 18 1
364 1771.87 wind 9 43200 > th dose dependent sin 13 NA
368 1772.01 radiation 30 1440 < th dose independent rect. 16 16
392 1772.38 temperature 20 1440 > th dose dependent rect. 10 23
396 1772.49 temperature 20 1440 > th dose dependent no NA NA
397 1772.49 temperature 25 1440 > th dose dependent rect. 11 3
422 1773.08 temperature 20 1440 > th dose dependent rect. 12 23
428 1773.24 radiation 30 1440 < th dose independent rect. 4 4
431 1773.29 temperature 20 1440 > th dose dependent rect. 15 23
438 1773.41 temperature 30 1440 < th dose dependent rect. 17 2
474 1774.21 wind 9 43200 > th dose dependent rect. 18 13
488 1774.56 radiation 30 1440 < th dose independent rect. 2 6
496 1774.63 radiation 30 1440 < th dose independent rect. 6 2
539 1775.32 radiation 30 1440 < th dose independent rect. 19 13
755 1779.29 wind 9 43200 > th dose dependent rect. 20 1
776 1779.69 wind 9 43200 > th dose independent sin 12 NA
793 1779.96 wind 7 43200 > th dose dependent rect. 2 19
833 1780.52 wind 7 43200 > th dose dependent rect. 24 21
895 1781.71 humidity 70 1440 > th dose independent rect. 17 2
912 1782.11 wind 9 43200 > th dose independent rect. 18 13
934 1782.64 wind 5 43200 < th dose independent sin 14 NA
943 1782.77 radiation 10 14400 > th dose independent rect. 5 1
961 1782.87 atmosphere 1005 14400 < th dose dependent rect. 10 1
986 1783.47 wind 5 43200 > th dose independent sin 15 NA
993 1783.67 radiation 30 14400 < th dose independent rect. 16 1