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Os07g0677400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peroxidase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.0345) R2 : 0.856
β1 : -2.2 (0.126) R2dD : 0.0987 R2D : 0.0337
β2 : 3.85 (0.0944) R2dC : 0.583 R2C : 0.264
β3 : 2.8 (0.0811) R2dE : 0.414 R2E : 0.089
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.11 (0.324) R2dD*E : 0.0291 R2D*E : -0.00765
γ1 : -0.947 (0.0736) R2dN8 : 0.0702 R2N8 : 0.0477
σ : 0.644
deviance : 191.29
__
_____
C
peak time of C : 18.6
E
wheather : radiation
threshold : 6.733
memory length : 58
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.62
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.39 0.648 12.8 -2.16 3.95 2.79 0.931 3.41 -0.972 18.7 10.32 30 2.05 --
232.5 0.71 12.8 -2.22 3.9 2.73 0.148 -- -0.983 18.8 11.06 26 1.99 --
191.29 0.644 12.8 -2.2 3.85 2.8 -- 3.11 -0.947 18.6 6.733 58 2.62 --
228.92 0.705 12.8 -2.21 3.85 2.8 -- -- -0.95 18.6 5.7 64 2.45 --
299.93 0.807 12.8 -2.16 -- 3.66 -- 1.96 -1.12 -- 141.4 50 8.95 --
294.58 0.805 12.9 -2.13 3.74 -- 2.04 -- -1.14 21.6 -- -- -- --
309.63 0.824 12.9 -2.2 3.74 -- -- -- -1.14 21.5 -- -- -- --
311.71 0.822 12.7 -2.25 -- 3.73 -- -- -1.13 -- 274.7 46 8.94 --
359.07 0.883 12.8 -- 3.79 2.62 -- -- -0.718 18.8 4.329 69 2.35 --
1134.11 1.57 12.8 -2.17 -- -- -- -- -1.15 -- -- -- -- --
437.12 0.978 12.8 -- 3.74 -- -- -- -0.892 21.4 -- -- -- --
437.72 0.974 12.7 -- -- 3.72 -- -- -0.876 -- 665.8 16 8.69 --
1258.8 1.66 12.7 -- -- -- -- -- -0.907 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.53 radiation 10.0 30 < th dose dependent sin 8 NA
2 191.43 radiation 1.0 90 < th dose independent sin 8 NA
22 203.03 radiation 1.0 90 > th dose independent sin 5 NA
32 206.84 radiation 1.0 90 < th dose independent rect. 23 14
33 206.85 radiation 1.0 90 < th dose independent rect. 23 16
37 206.94 radiation 1.0 90 < th dose independent rect. 23 9
45 209.13 temperature 20.0 90 > th dose independent rect. 5 6
53 210.87 radiation 1.0 90 < th dose dependent rect. 23 14
54 210.87 radiation 1.0 90 < th dose dependent rect. 23 16
57 210.97 radiation 1.0 90 < th dose dependent rect. 23 9
62 211.20 wind 3.0 30 < th dose independent rect. 6 5
64 212.03 wind 5.0 30 < th dose dependent rect. 6 5
70 212.84 temperature 15.0 270 > th dose dependent rect. 5 2
76 213.63 radiation 1.0 90 > th dose independent rect. 4 7
90 214.39 temperature 15.0 270 > th dose dependent rect. 4 4
92 214.82 temperature 20.0 90 > th dose independent rect. 5 18
94 215.05 temperature 20.0 270 > th dose independent rect. 5 2
99 215.58 temperature 25.0 10 > th dose independent rect. 5 6
103 216.22 radiation 10.0 10 < th dose dependent rect. 24 14
109 216.67 temperature 20.0 270 > th dose independent rect. 4 4
120 217.48 humidity 80.0 270 > th dose independent rect. 5 2
122 217.63 radiation 10.0 10 < th dose dependent rect. 24 6
124 217.79 wind 9.0 270 < th dose dependent rect. 4 17
130 218.26 wind 1.0 270 > th dose independent rect. 8 10
140 218.50 temperature 10.0 90 > th dose dependent rect. 5 6
141 218.62 humidity 60.0 270 > th dose independent rect. 18 14
145 218.83 radiation 30.0 270 < th dose independent rect. 18 14
148 218.93 radiation 10.0 10 < th dose dependent rect. 24 9
155 219.24 temperature 10.0 270 > th dose independent rect. 8 10
156 219.24 atmosphere 1015.0 270 < th dose independent rect. 8 10
157 219.24 temperature 10.0 270 > th dose independent rect. 18 14
167 219.46 wind 9.0 270 < th dose independent rect. 18 14
179 219.85 atmosphere 995.0 270 > th dose independent rect. 18 14
199 220.15 radiation 1.0 90 < th dose dependent rect. 23 20
201 220.26 wind 9.0 90 < th dose dependent rect. 5 12
221 221.03 temperature 30.0 270 < th dose independent rect. 18 14
234 221.67 precipitation 0.1 270 < th dose independent rect. 18 14
236 221.67 precipitation 0.1 270 < th dose dependent rect. 18 14
237 221.72 humidity 80.0 270 > th dose independent rect. 4 4
261 222.00 radiation 1.0 90 < th dose dependent rect. 21 22
263 222.08 humidity 60.0 10 > th dose independent rect. 6 5
264 222.14 wind 3.0 270 < th dose independent rect. 6 1
265 222.16 precipitation 0.1 270 < th dose independent rect. 23 4
266 222.16 precipitation 0.1 270 < th dose dependent rect. 23 4
271 222.30 wind 9.0 270 < th dose independent rect. 8 10
273 222.32 wind 7.0 270 < th dose independent rect. 23 4
281 222.42 wind 7.0 270 < th dose independent rect. 22 6
283 222.47 temperature 15.0 270 > th dose independent rect. 23 4
284 222.47 wind 9.0 270 < th dose independent rect. 4 18
286 222.49 wind 9.0 270 < th dose independent rect. 3 20
287 222.50 temperature 15.0 270 > th dose independent rect. 3 20
289 222.53 precipitation 0.1 270 < th dose independent rect. 8 10
290 222.53 precipitation 0.1 270 < th dose dependent rect. 8 10
295 222.61 temperature 30.0 270 < th dose independent rect. 23 4
296 222.61 humidity 50.0 270 > th dose independent rect. 23 4
299 222.61 atmosphere 995.0 270 > th dose independent rect. 23 4
300 222.61 radiation 1.0 270 < th dose independent rect. 23 4
305 222.61 temperature 10.0 270 > th dose independent rect. 22 6
306 222.61 temperature 30.0 270 < th dose independent rect. 22 6
307 222.61 humidity 50.0 270 > th dose independent rect. 22 6
310 222.61 atmosphere 995.0 270 > th dose independent rect. 22 6
318 222.61 radiation 1.0 270 < th dose dependent rect. 23 4
358 223.73 precipitation 0.1 270 < th dose independent rect. 4 18
359 223.73 precipitation 0.1 270 < th dose dependent rect. 4 18
360 223.77 atmosphere 995.0 10 > th dose dependent rect. 24 6
362 223.84 temperature 10.0 10 > th dose dependent rect. 6 18
367 224.02 radiation 1.0 90 < th dose independent rect. 21 22
369 224.06 precipitation 0.1 270 < th dose independent rect. 22 6
370 224.06 precipitation 0.1 270 < th dose dependent rect. 22 6
372 224.08 humidity 50.0 270 > th dose dependent rect. 5 2
374 224.15 wind 9.0 10 < th dose independent rect. 6 18
377 224.24 precipitation 0.1 270 < th dose independent rect. 3 20
378 224.24 precipitation 0.1 270 < th dose dependent rect. 3 20
379 224.25 wind 5.0 10 < th dose independent rect. 24 6
383 224.34 wind 9.0 270 < th dose dependent rect. 5 2
414 224.53 wind 9.0 90 < th dose dependent rect. 6 17
421 224.65 atmosphere 1015.0 270 < th dose independent rect. 23 4
431 224.75 radiation 20.0 270 < th dose independent rect. 5 2
432 224.76 radiation 10.0 10 < th dose independent rect. 24 6
435 224.80 wind 9.0 1440 < th dose independent rect. 1 6
436 224.81 temperature 15.0 10 > th dose independent rect. 24 6
437 224.85 temperature 20.0 90 > th dose independent rect. 5 12
443 224.87 temperature 30.0 10 < th dose independent rect. 24 6
444 224.87 humidity 50.0 10 > th dose independent rect. 24 6
447 224.87 atmosphere 995.0 10 > th dose independent rect. 24 6
451 224.87 temperature 10.0 10 > th dose independent rect. 6 18
453 224.94 temperature 20.0 10 > th dose independent rect. 6 16
457 225.05 radiation 1.0 90 < th dose independent rect. 23 20
462 225.19 humidity 60.0 14400 > th dose independent rect. 1 6
464 225.24 precipitation 0.1 10 < th dose independent rect. 6 5
465 225.24 precipitation 0.1 10 < th dose dependent rect. 6 5
473 225.36 atmosphere 1015.0 10 < th dose independent rect. 24 6
483 225.53 humidity 50.0 30 > th dose independent rect. 11 19
488 225.58 humidity 50.0 270 > th dose dependent rect. 18 14
494 225.71 humidity 50.0 30 > th dose dependent rect. 6 5
501 225.76 temperature 10.0 30 > th dose independent rect. 6 5
504 225.76 atmosphere 995.0 30 > th dose independent rect. 6 5
505 225.76 atmosphere 1015.0 30 < th dose independent rect. 6 5
506 225.76 temperature 10.0 30 > th dose independent rect. 11 19
515 225.83 temperature 10.0 1440 > th dose independent rect. 7 5
518 225.83 atmosphere 995.0 1440 > th dose independent rect. 7 5
519 225.83 temperature 10.0 1440 > th dose independent rect. 12 19
522 225.84 precipitation 0.1 270 < th dose independent rect. 5 2
523 225.84 precipitation 0.1 270 < th dose dependent rect. 5 2
534 226.18 atmosphere 1015.0 270 < th dose independent rect. 4 18
539 226.23 wind 7.0 270 < th dose independent rect. 5 2
541 226.23 temperature 10.0 270 > th dose independent rect. 5 2
543 226.23 temperature 30.0 270 < th dose independent rect. 5 2
544 226.23 humidity 50.0 270 > th dose independent rect. 5 2
546 226.23 atmosphere 995.0 270 > th dose independent rect. 5 2
547 226.23 atmosphere 1015.0 270 < th dose independent rect. 5 2
549 226.23 temperature 10.0 270 > th dose independent rect. 7 22
572 226.37 atmosphere 1015.0 270 < th dose independent rect. 22 6
573 226.38 atmosphere 995.0 270 > th dose independent rect. 8 10
606 226.83 wind 1.0 270 > th dose independent rect. 22 6
608 226.86 wind 1.0 270 > th dose independent rect. 23 4
633 227.04 wind 9.0 270 < th dose dependent rect. 23 4
645 227.11 radiation 40.0 30 < th dose independent rect. 6 5
658 227.13 temperature 30.0 30 < th dose independent rect. 6 5
663 227.18 wind 5.0 10 < th dose independent rect. 22 8
676 227.24 atmosphere 995.0 270 > th dose dependent rect. 23 4
692 227.45 precipitation 0.1 30 < th dose independent rect. 11 19
693 227.45 precipitation 0.1 30 < th dose dependent rect. 11 19
702 227.53 temperature 30.0 10 < th dose dependent rect. 24 6
707 227.60 wind 1.0 270 > th dose independent rect. 8 20
711 227.65 wind 9.0 30 < th dose independent rect. 11 19
717 227.70 humidity 90.0 10 < th dose independent rect. 6 5
739 227.75 radiation 20.0 10 < th dose dependent rect. 22 8
754 228.02 atmosphere 995.0 30 > th dose independent rect. 11 19
765 228.20 wind 1.0 270 > th dose independent rect. 9 18
787 228.37 radiation 40.0 270 < th dose dependent rect. 5 2
794 228.42 precipitation 0.1 90 < th dose independent rect. 6 17
795 228.42 precipitation 0.1 90 < th dose dependent rect. 6 17
796 228.44 temperature 10.0 1440 > th dose independent rect. 1 6
799 228.44 temperature 30.0 1440 < th dose independent rect. 1 6
803 228.44 humidity 50.0 1440 > th dose independent rect. 1 6
808 228.44 atmosphere 995.0 1440 > th dose independent rect. 1 6
809 228.44 radiation 40.0 1440 < th dose independent rect. 1 6
813 228.44 temperature 10.0 1440 > th dose independent rect. 7 18
824 228.55 humidity 50.0 270 > th dose dependent rect. 4 4
826 228.57 atmosphere 1015.0 10 < th dose independent rect. 6 18
834 228.68 precipitation 0.1 10 < th dose independent rect. 6 18
836 228.68 precipitation 0.1 10 < th dose dependent rect. 6 18
849 228.86 wind 3.0 30 < th dose independent rect. 6 12
850 228.91 wind 9.0 10 < th dose dependent rect. 24 6
854 228.96 radiation 10.0 10 < th dose dependent rect. 11 19
862 229.05 wind 9.0 270 < th dose dependent rect. 22 6
863 229.05 radiation 40.0 270 < th dose dependent rect. 18 14
864 229.08 wind 9.0 1440 < th dose independent rect. 23 8
870 229.14 wind 3.0 90 < th dose independent rect. 5 16
874 229.16 radiation 20.0 270 < th dose independent rect. 4 4
877 229.18 wind 1.0 10 > th dose independent rect. 6 5
894 229.40 wind 3.0 90 < th dose independent rect. 5 14
900 229.43 radiation 1.0 90 > th dose independent rect. 4 13
934 229.56 wind 9.0 10 < th dose dependent rect. 6 18
937 229.58 precipitation 0.1 270 < th dose independent rect. 4 4
939 229.58 precipitation 0.1 270 < th dose dependent rect. 4 4
976 229.90 temperature 10.0 10 > th dose dependent rect. 6 16
978 229.92 atmosphere 1015.0 90 < th dose independent rect. 6 17