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Os07g0677200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peroxidase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0707) R2 : 0.623
β1 : 0.55 (0.264) R2dD : 0.000213 R2D : -0.00248
β2 : 2.51 (0.221) R2dC : 0.172 R2C : 0.383
β3 : 3.11 (0.273) R2dE : 0.184 R2E : 0.406
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.86 (0.936) R2dD*E : 0.0289 R2D*E : 0.00853
γ1 : 0.774 (0.151) R2dN8 : 0.0273 R2N8 : 0.0297
σ : 1.32
deviance : 803.65
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C
peak time of C : 1.97
E
wheather : humidity
threshold : 71.14
memory length : 1540
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.6
open length of G : 14.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
807.21 1.33 11.7 0.517 2.64 3.24 2.03 3.97 0.67 2.01 70.54 1522 17.5 14.6
805.2 1.32 11.7 0.669 2.2 3.43 3.77 -- 0.876 1.78 71.06 1539 17.6 14.5
803.65 1.32 11.7 0.55 2.51 3.11 -- 5.86 0.774 1.97 71.14 1540 17.6 14.5
859.49 1.37 11.7 0.619 1.84 3.58 -- -- 0.733 1.75 71.13 1564 17.7 14.4
852.18 1.36 11.6 0.529 -- 5.34 -- 6.2 0.849 -- 71 1642 17.5 13.9
1080.1 1.54 11.6 0.57 3.93 -- 3.02 -- 0.904 1.81 -- -- -- --
1115.33 1.56 11.6 0.473 3.94 -- -- -- 0.886 1.9 -- -- -- --
915 1.41 11.6 0.638 -- 5.2 -- -- 0.798 -- 71 1645 17.5 13.8
868.75 1.37 11.7 -- 1.84 3.59 -- -- 0.67 1.68 71.17 1564 17.8 14.4
2052.95 2.12 11.6 0.636 -- -- -- -- 0.977 -- -- -- -- --
1121.23 1.57 11.6 -- 3.95 -- -- -- 0.833 1.9 -- -- -- --
923.15 1.42 11.7 -- -- 5.2 -- -- 0.628 -- 71.94 1605 17.9 14.2
2063.61 2.12 11.6 -- -- -- -- -- 0.906 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 846.63 humidity 70 1440 > th dose independent rect. 17 15
4 853.40 humidity 70 1440 > th dose independent rect. 17 6
16 855.43 humidity 70 1440 < th dose independent rect. 17 15
20 860.14 humidity 70 1440 < th dose independent rect. 17 2
32 860.48 humidity 70 1440 < th dose dependent rect. 15 2
36 863.61 temperature 30 1440 > th dose dependent rect. 15 1
51 866.42 temperature 30 1440 > th dose dependent rect. 14 5
82 866.80 temperature 30 1440 > th dose dependent sin 13 NA
106 867.91 humidity 70 1440 < th dose dependent rect. 15 18
123 870.76 humidity 60 1440 < th dose dependent rect. 13 4
124 870.91 humidity 60 1440 > th dose independent rect. 14 19
132 871.78 humidity 60 1440 > th dose independent rect. 14 4
148 872.18 humidity 80 1440 < th dose dependent rect. 15 6
172 873.17 humidity 60 1440 > th dose independent rect. 14 10
194 873.57 humidity 60 1440 > th dose independent rect. 15 2
200 873.72 humidity 60 1440 < th dose independent rect. 14 19
202 873.80 humidity 60 1440 < th dose independent rect. 14 4
207 874.22 humidity 80 1440 < th dose dependent rect. 18 2
216 874.76 temperature 25 720 > th dose dependent rect. 17 16
296 877.18 humidity 70 720 > th dose independent sin 12 NA
300 877.67 temperature 15 1440 > th dose dependent rect. 18 1
361 879.25 humidity 70 1440 < th dose dependent sin 14 NA
382 879.79 temperature 30 1440 > th dose dependent no NA NA
571 882.53 humidity 60 1440 > th dose independent sin 14 NA
575 882.68 temperature 30 1440 > th dose dependent rect. 17 23
584 882.98 temperature 30 1440 < th dose dependent rect. 18 1
661 884.20 humidity 70 1440 < th dose independent sin 12 NA
677 884.44 humidity 60 1440 < th dose independent sin 14 NA
745 885.93 temperature 30 720 > th dose independent rect. 18 15
767 886.16 wind 1 1440 < th dose independent rect. 3 3
894 888.68 humidity 70 720 > th dose dependent rect. 19 2