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Os07g0677100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peroxidase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.9 (0.0834) R2 : 0.529
β1 : 0.106 (0.329) R2dD : 0.000255 R2D : -0.0111
β2 : 2.94 (0.197) R2dC : 0.237 R2C : 0.281
β3 : 4.47 (0.327) R2dE : 0.247 R2E : 0.24
β4 : 2.69 (0.749) R2dD*C : 0.013 R2D*C : -0.00252
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.989 (0.185) R2dN8 : 0.0428 R2N8 : -0.00876
σ : 1.54
deviance : 1087.84
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C
peak time of C : 0.466
E
wheather : wind
threshold : 6.148
memory length : 3766
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.2
open length of G : 2.33

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1082.86 1.55 8.86 0.0468 2.95 3.94 2.8 -2.7 0.984 0.472 6.156 3767 17.2 2.3
1087.84 1.54 8.9 0.106 2.94 4.47 2.69 -- 0.989 0.466 6.148 3766 17.2 2.33
1113.04 1.55 8.87 -0.0971 2.95 4 -- -1.72 0.962 0.759 6.191 3772 17.2 2.28
1114.52 1.55 8.92 -0.0804 2.95 4.35 -- -- 0.904 0.738 6.201 3767 17.2 2.27
1637.03 1.88 8.91 -0.119 -- 4.57 -- -1.84 1.03 -- 5.342 3690 17.4 2.48
1531.72 1.83 9.1 -1.66 3.33 -- 1.34 -- 0.143 0.706 -- -- -- --
1538.86 1.84 9.1 -1.71 3.33 -- -- -- 0.134 0.822 -- -- -- --
1606.02 1.87 8.99 0.576 -- 6.02 -- -- 0.691 -- 3.733 3690 17.4 2.54
1114.37 1.55 8.92 -- 2.96 4.36 -- -- 0.925 0.738 6.218 3766 17.2 2.25
2231.35 2.21 9.05 -1.59 -- -- -- -- 0.196 -- -- -- -- --
1615.88 1.88 9.06 -- 3.3 -- -- -- 0.325 0.799 -- -- -- --
1588.99 1.86 8.97 -- -- 6.1 -- -- 0.592 -- 3.621 3647 17.6 2.93
2297.84 2.24 9.01 -- -- -- -- -- 0.372 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1113.71 wind 7 4320 < th dose independent rect. 17 3
3 1118.99 wind 7 4320 > th dose independent rect. 17 3
9 1132.69 wind 7 4320 > th dose dependent rect. 17 2
12 1136.35 humidity 70 720 > th dose independent rect. 17 14
28 1148.89 humidity 70 720 > th dose independent sin 12 NA
32 1152.27 humidity 70 720 > th dose independent rect. 18 9
42 1157.81 wind 5 4320 > th dose dependent rect. 19 1
44 1158.04 radiation 1 1440 > th dose independent rect. 11 20
45 1158.30 humidity 70 720 > th dose independent rect. 17 6
47 1158.76 radiation 1 1440 < th dose independent rect. 11 20
51 1159.63 humidity 70 1440 < th dose independent rect. 17 14
52 1159.80 humidity 70 1440 < th dose independent rect. 17 3
64 1160.54 humidity 70 720 > th dose independent rect. 17 4
75 1163.94 radiation 1 14400 < th dose dependent rect. 4 1
140 1173.18 wind 5 4320 > th dose dependent rect. 17 8
142 1173.36 wind 7 4320 < th dose independent rect. 15 10
152 1174.99 wind 5 4320 > th dose independent rect. 17 9
169 1177.25 humidity 70 1440 < th dose independent sin 13 NA
188 1179.31 wind 7 4320 > th dose independent rect. 15 10
198 1180.42 radiation 1 14400 > th dose independent rect. 9 1
212 1181.35 humidity 70 1440 < th dose dependent rect. 15 4
218 1181.82 temperature 20 14400 < th dose dependent rect. 11 18
220 1181.92 humidity 50 720 > th dose dependent rect. 17 6
223 1182.08 wind 9 4320 > th dose independent rect. 17 17
234 1182.53 humidity 70 1440 < th dose dependent rect. 15 18
235 1182.64 wind 7 4320 < th dose independent rect. 15 15
236 1182.66 radiation 1 1440 < th dose dependent rect. 11 20
256 1182.98 radiation 1 14400 < th dose independent rect. 9 1
263 1183.15 radiation 1 1440 < th dose dependent rect. 9 22
321 1185.32 temperature 20 14400 < th dose dependent rect. 20 7
322 1185.34 temperature 20 14400 < th dose dependent rect. 21 5
330 1185.70 temperature 20 14400 < th dose dependent sin 15 NA
331 1185.71 temperature 20 14400 < th dose dependent rect. 18 9
368 1186.55 humidity 70 1440 < th dose dependent sin 14 NA
377 1186.99 wind 7 4320 > th dose independent rect. 15 16
382 1187.20 humidity 70 1440 < th dose dependent rect. 16 1
447 1189.98 wind 7 4320 < th dose independent sin 15 NA
451 1190.04 radiation 1 720 < th dose dependent rect. 5 21
494 1191.49 temperature 20 14400 < th dose dependent rect. 23 2
502 1191.71 radiation 1 1440 < th dose dependent sin 23 NA
514 1192.06 temperature 20 14400 < th dose dependent rect. 18 22
515 1192.09 temperature 20 14400 < th dose dependent rect. 20 21
518 1192.23 temperature 20 14400 < th dose dependent rect. 20 23
570 1192.51 temperature 20 14400 < th dose dependent no NA NA
571 1192.52 wind 7 43200 > th dose independent rect. 13 1
580 1192.70 wind 3 4320 > th dose dependent rect. 24 1
593 1193.03 temperature 20 14400 < th dose dependent rect. 23 23
608 1193.23 temperature 20 14400 < th dose dependent rect. 4 23
648 1194.14 wind 5 4320 > th dose dependent sin 15 NA
687 1195.07 temperature 15 14400 > th dose independent rect. 9 1
700 1195.39 radiation 1 1440 > th dose independent sin 14 NA
718 1195.68 wind 7 4320 > th dose independent sin 15 NA
781 1197.27 humidity 70 1440 > th dose independent rect. 17 21
805 1198.04 radiation 1 1440 < th dose independent sin 14 NA
828 1198.67 radiation 1 1440 > th dose independent rect. 17 23
829 1198.68 temperature 20 14400 < th dose independent rect. 1 1
832 1198.82 radiation 1 1440 < th dose independent rect. 17 23
834 1198.91 wind 7 43200 < th dose independent rect. 13 1
882 1199.67 humidity 70 1440 < th dose dependent rect. 11 8
884 1199.77 wind 7 43200 > th dose dependent rect. 12 6
888 1199.86 temperature 15 14400 > th dose independent rect. 24 1
893 1199.96 radiation 1 720 < th dose independent rect. 5 21
896 1200.10 radiation 1 1440 > th dose independent rect. 5 14
912 1200.23 radiation 1 1440 < th dose independent rect. 5 18
920 1200.40 radiation 1 1440 < th dose dependent rect. 11 12
925 1200.46 radiation 1 1440 < th dose independent rect. 5 14
927 1200.48 radiation 1 1440 < th dose dependent rect. 11 16
968 1200.80 radiation 1 1440 < th dose dependent rect. 11 8
974 1200.96 temperature 15 14400 < th dose independent rect. 9 1
979 1201.19 temperature 20 14400 > th dose independent rect. 4 1
983 1201.27 radiation 1 1440 > th dose independent no NA NA