Os07g0676600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-loop-helix DNA-binding domain containing protein.
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Os07g0676600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-loop-helix DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 467.46 | 1.02 | 4.35 | 2.26 | 0.414 | 120 | -0.742 | 248 | -0.263 | 12.8 | 14.87 | 1473 | -- | -- |
| 475.73 | 1.02 | 3.21 | -0.345 | 0.431 | 2.28 | -0.73 | -- | -0.308 | 13.3 | 14.87 | 1473 | -- | -- |
| 469.48 | 1.01 | 4.35 | 2.25 | 0.428 | 120 | -- | 249 | -0.259 | 13.6 | 14.87 | 1470 | -- | -- |
| 471.59 | 1.01 | 3.21 | -0.252 | 0.431 | 2.56 | -- | -- | -0.277 | 13.7 | 14.82 | 1470 | -- | -- |
| 480.42 | 1.02 | 4.36 | 2.2 | -- | 120 | -- | 250 | -0.283 | -- | 14.87 | 1470 | -- | -- |
| 485.42 | 1.03 | 3.22 | -0.443 | 0.399 | -- | -0.437 | -- | -0.332 | 13.6 | -- | -- | -- | -- |
| 486.13 | 1.03 | 3.22 | -0.456 | 0.403 | -- | -- | -- | -0.334 | 13.9 | -- | -- | -- | -- |
| 482.54 | 1.02 | 3.2 | -0.258 | -- | 2.42 | -- | -- | -0.281 | -- | 14.89 | 1473 | -- | -- |
| 473.06 | 1.01 | 3.21 | -- | 0.415 | 2.7 | -- | -- | -0.263 | 13.6 | 14.9 | 1473 | -- | -- |
| 495.92 | 1.04 | 3.23 | -0.473 | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
| 491.62 | 1.04 | 3.21 | -- | 0.411 | -- | -- | -- | -0.283 | 13.9 | -- | -- | -- | -- |
| 471.07 | 1.01 | 3.19 | -- | -- | 1.8 | -- | -- | -0.158 | -- | 20.53 | 1035 | -- | -- |
| 501.83 | 1.05 | 3.22 | -- | -- | -- | -- | -- | -0.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 454.71 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 16 | 2 |
| 13 | 456.69 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 14 | 457.08 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 16 | 457.31 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 18 | 457.40 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 20 | 457.46 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 86 | 458.03 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 90 | 458.03 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 93 | 458.03 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 118 | 459.98 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 120 | 460.03 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 134 | 460.21 | radiation | 40.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 140 | 461.15 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 142 | 461.18 | temperature | 25.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 145 | 461.25 | temperature | 25.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 146 | 461.25 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 161 | 461.25 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 177 | 461.35 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 179 | 461.39 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 180 | 461.43 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 181 | 461.44 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 188 | 461.53 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 201 | 462.03 | wind | 3.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 202 | 462.18 | humidity | 60.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 216 | 462.94 | humidity | 80.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 229 | 463.29 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 232 | 463.43 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 233 | 463.47 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 237 | 463.50 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 238 | 463.50 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 3 | 15 |
| 239 | 463.52 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 13 | 5 |
| 251 | 463.52 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 13 | 5 |
| 264 | 463.62 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 275 | 463.73 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 1 |
| 303 | 463.73 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 334 | 463.85 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 335 | 463.86 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 338 | 463.88 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 340 | 463.88 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 342 | 463.88 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 343 | 463.88 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 1 |
| 344 | 463.88 | temperature | 10.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 345 | 463.88 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 351 | 463.96 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 352 | 463.96 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 363 | 464.08 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 364 | 464.08 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 370 | 464.10 | atmosphere | 1010.0 | 10 | > th | dose independent | rect. | 24 | 10 |
| 382 | 464.21 | atmosphere | 1010.0 | 90 | > th | dose independent | rect. | 24 | 9 |
| 395 | 464.25 | temperature | 30.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 458 | 464.36 | atmosphere | 1010.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 459 | 464.36 | atmosphere | 1010.0 | 10 | > th | dose independent | rect. | 9 | 1 |
| 518 | 464.40 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 17 |
| 520 | 464.48 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 527 | 464.58 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 537 | 464.67 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 540 | 464.75 | wind | 9.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 551 | 464.83 | temperature | 20.0 | 720 | < th | dose independent | rect. | 6 | 1 |
| 555 | 464.95 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 559 | 465.03 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 13 |
| 561 | 465.03 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 564 | 465.04 | wind | 5.0 | 10 | > th | dose independent | rect. | 9 | 1 |
| 571 | 465.11 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 577 | 465.24 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 21 | 6 |
| 582 | 465.30 | atmosphere | 1010.0 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 583 | 465.31 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 601 | 465.37 | radiation | 20.0 | 90 | < th | dose independent | rect. | 19 | 22 |
| 605 | 465.39 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 612 | 465.45 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 650 | 465.81 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 660 | 465.89 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 707 | 466.05 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 20 |
| 720 | 466.19 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 21 | 21 |
| 730 | 466.34 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 20 |
| 731 | 466.35 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 743 | 466.42 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 1 |
| 747 | 466.53 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 757 | 466.57 | atmosphere | 1010.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 758 | 466.58 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 760 | 466.59 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 18 |
| 761 | 466.59 | temperature | 20.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 797 | 466.80 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 19 |
| 799 | 466.81 | temperature | 15.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 801 | 466.82 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 818 | 466.89 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 844 | 466.94 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 851 | 466.96 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 4 |
| 859 | 467.00 | temperature | 20.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 872 | 467.08 | wind | 9.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 873 | 467.08 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 880 | 467.14 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 886 | 467.16 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 21 | 3 |
| 890 | 467.16 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 21 | 3 |
| 913 | 467.23 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 23 | 1 |
| 918 | 467.23 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 23 | 1 |
| 922 | 467.24 | wind | 1.0 | 10 | < th | dose independent | rect. | 23 | 1 |
| 926 | 467.24 | radiation | 30.0 | 270 | < th | dose independent | rect. | 11 | 1 |
| 929 | 467.24 | wind | 1.0 | 10 | < th | dose dependent | rect. | 23 | 1 |
| 958 | 467.34 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 993 | 467.43 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 16 | 8 |