Os07g0674300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0674300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.33 | 0.549 | 5.56 | 1.14 | 1.89 | 1.48 | 0.63 | 1.02 | 0.105 | 19.2 | 25.81 | 237 | -- | -- |
| 136.5 | 0.544 | 5.57 | 1.03 | 1.9 | 1.59 | 0.702 | -- | 0.0936 | 19.2 | 26.08 | 230 | -- | -- |
| 137.29 | 0.546 | 5.55 | 1.17 | 1.89 | 1.47 | -- | 1.5 | 0.12 | 19.2 | 25.88 | 235 | -- | -- |
| 137.78 | 0.547 | 5.57 | 1.01 | 1.89 | 1.62 | -- | -- | 0.0991 | 19.2 | 26.18 | 233 | -- | -- |
| 249.13 | 0.735 | 5.57 | 0.799 | -- | 2.84 | -- | 0.862 | -0.152 | -- | 24.45 | 404 | -- | -- |
| 176.83 | 0.623 | 5.57 | 1.27 | 2.44 | -- | 1.33 | -- | 0.145 | 18.6 | -- | -- | -- | -- |
| 181.24 | 0.63 | 5.56 | 1.25 | 2.44 | -- | -- | -- | 0.149 | 18.6 | -- | -- | -- | -- |
| 248.04 | 0.734 | 5.57 | 0.718 | -- | 2.89 | -- | -- | -0.157 | -- | 24.5 | 401 | -- | -- |
| 163.47 | 0.595 | 5.6 | -- | 1.77 | 1.84 | -- | -- | -0.0589 | 19.4 | 25.53 | 239 | -- | -- |
| 491.57 | 1.04 | 5.52 | 1.2 | -- | -- | -- | -- | 0.0994 | -- | -- | -- | -- | -- |
| 222.71 | 0.698 | 5.6 | -- | 2.42 | -- | -- | -- | 0.00953 | 18.6 | -- | -- | -- | -- |
| 260.89 | 0.752 | 5.6 | -- | -- | 3 | -- | -- | -0.258 | -- | 24.4 | 404 | -- | -- |
| 529.24 | 1.07 | 5.55 | -- | -- | -- | -- | -- | -0.0332 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 2 | 133.18 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 22 |
| 3 | 133.34 | temperature | 25 | 270 | > th | dose dependent | sin | 0 | NA |
| 17 | 134.59 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 16 |
| 24 | 134.85 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 25 | 134.90 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 9 |
| 29 | 134.97 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 32 | 134.98 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 38 | 135.09 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 22 |
| 40 | 135.13 | temperature | 25 | 90 | > th | dose dependent | sin | 21 | NA |
| 95 | 136.23 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 19 |
| 147 | 136.74 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 22 |
| 159 | 136.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 164 | 137.00 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 181 | 137.09 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 199 | 137.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 15 |
| 278 | 137.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 287 | 137.94 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 290 | 137.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 342 | 138.59 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 354 | 138.71 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 360 | 138.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 430 | 139.26 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 14 |
| 446 | 139.35 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 477 | 139.62 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |
| 492 | 139.69 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 22 |
| 515 | 139.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 587 | 140.28 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 607 | 140.39 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 8 |
| 734 | 141.03 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 809 | 141.27 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |