Os07g0674200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L22-2.
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Os07g0674200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L22-2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.81 | 0.406 | 13.5 | 0.793 | 0.834 | 0.578 | 0.809 | -1.39 | 0.0936 | 18.8 | 19.85 | 2908 | -- | -- |
| 77.29 | 0.409 | 13.5 | 1.01 | 0.838 | 0.885 | 0.837 | -- | 0.161 | 18.7 | 19.42 | 2817 | -- | -- |
| 76.43 | 0.407 | 13.5 | 0.773 | 0.842 | 0.579 | -- | -1.43 | 0.0932 | 18.7 | 19.8 | 2863 | -- | -- |
| 79.22 | 0.415 | 13.5 | 0.979 | 0.839 | 0.902 | -- | -- | 0.152 | 18.6 | 19.4 | 2828 | -- | -- |
| 112.69 | 0.494 | 13.5 | 0.725 | -- | 0.554 | -- | -1.49 | 0.0656 | -- | 19.8 | 3490 | -- | -- |
| 90.5 | 0.446 | 13.4 | 1.46 | 0.813 | -- | 0.983 | -- | 0.344 | 18.8 | -- | -- | -- | -- |
| 92.96 | 0.452 | 13.4 | 1.44 | 0.817 | -- | -- | -- | 0.347 | 18.7 | -- | -- | -- | -- |
| 114.7 | 0.499 | 13.5 | 0.934 | -- | 0.9 | -- | -- | 0.157 | -- | 19 | 3467 | -- | -- |
| 83.39 | 0.425 | 13.5 | -- | 0.781 | 1.3 | -- | -- | 0.037 | 19 | 18.7 | 21719 | -- | -- |
| 127.85 | 0.528 | 13.4 | 1.42 | -- | -- | -- | -- | 0.331 | -- | -- | -- | -- | -- |
| 147.72 | 0.569 | 13.5 | -- | 0.8 | -- | -- | -- | 0.187 | 18.9 | -- | -- | -- | -- |
| 116.58 | 0.503 | 13.5 | -- | -- | 1.36 | -- | -- | -0.0812 | -- | 16.38 | 47520 | -- | -- |
| 181.26 | 0.628 | 13.5 | -- | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.44 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 2 | 73.46 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 3 | 73.57 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 4 | 73.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 6 | 73.73 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 23 | 73.97 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 48 | 74.20 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 54 | 74.22 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 65 | 74.25 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 69 | 74.29 | humidity | 50 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 79 | 74.33 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 132 | 74.57 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 176 | 74.81 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 188 | 74.89 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 197 | 74.93 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 198 | 74.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 236 | 75.07 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 250 | 75.10 | humidity | 70 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 289 | 75.25 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 297 | 75.29 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 328 | 75.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 330 | 75.44 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 348 | 75.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 399 | 75.61 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 427 | 75.67 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 440 | 75.71 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 456 | 75.75 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 463 | 75.75 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 468 | 75.76 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 469 | 75.76 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 471 | 75.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 493 | 75.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 497 | 75.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 503 | 75.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 510 | 75.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 515 | 75.84 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 528 | 75.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 542 | 75.89 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 548 | 75.90 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 553 | 75.90 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 559 | 75.92 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 579 | 75.95 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 612 | 76.02 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 617 | 76.02 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 635 | 76.02 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 654 | 76.03 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 655 | 76.03 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 662 | 76.05 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 703 | 76.11 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 747 | 76.18 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 757 | 76.20 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 758 | 76.20 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 772 | 76.21 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 23 | 10 |
| 776 | 76.22 | wind | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 783 | 76.24 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 784 | 76.24 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 814 | 76.28 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 826 | 76.29 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 15 |
| 848 | 76.32 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 10 | NA |
| 849 | 76.32 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 856 | 76.32 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 20 |
| 949 | 76.44 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 952 | 76.44 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 17 |
| 976 | 76.47 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 992 | 76.49 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 14 |