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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0672700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UDP-glucuronosyl/UDP-glucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.8 (0.0141) R2 : 0.467
β1 : 0.153 (0.0514) R2dD : 0.0113 R2D : -0.0274
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.01 (0.253) R2dE : 2.54 R2E : -1.86
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 10.4 (0.552) R2dD*E : 2.27 R2D*E : -2.02
γ1 : 0.00797 (0.0294) R2dN8 : 0.000116 R2N8 : -0.0252
σ : 0.256
deviance : 30.33
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.11
memory length : 86
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.04
open length of G : 5.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.24 0.258 2.8 0.155 0.00747 5.03 0.186 10.4 0.00738 17.8 20.1 87 7.03 5.55
50.96 0.335 2.74 0.124 0.0112 1.04 -0.308 -- 0.0193 0.141 20.1 87 7.03 5.55
30.32 0.256 2.8 0.154 0.00844 5.02 -- 10.4 0.00825 18 20.11 86 7.04 5.62
51.32 0.336 2.74 0.13 0.0278 0.978 -- -- 0.0186 4.7 20.1 87 7.03 5.55
30.33 0.256 2.8 0.153 -- 5.01 -- 10.4 0.00797 -- 20.11 86 7.04 5.7
56.66 0.353 2.74 0.0437 0.0478 -- 0.0718 -- -0.0069 8.84 -- -- -- --
56.68 0.353 2.74 0.0459 0.0481 -- -- -- -0.00698 8.51 -- -- -- --
51.36 0.335 2.74 0.131 -- 0.977 -- -- 0.0193 -- 19.8 45 7.25 5.89
51.75 0.337 2.74 -- 0.03 0.927 -- -- 0.00329 4.85 19.9 45 7.24 5.38
56.81 0.352 2.75 0.0461 -- -- -- -- -0.00652 -- -- -- -- --
56.73 0.352 2.75 -- 0.0483 -- -- -- -0.0121 8.44 -- -- -- --
46.09 0.316 2.68 -- -- 1.42 -- -- 0.0854 -- 19.6 12 6.62 3.11
56.86 0.352 2.75 -- -- -- -- -- -0.0116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.56 temperature 20 90 < th dose dependent rect. 8 1
3 31.18 temperature 20 90 < th dose independent rect. 7 5
13 31.29 temperature 20 10 < th dose independent rect. 7 5
15 31.30 temperature 20 10 < th dose dependent rect. 7 5
27 31.33 temperature 20 10 < th dose independent rect. 8 2
36 31.33 temperature 20 10 < th dose dependent rect. 8 2
58 31.37 wind 5 10 > th dose independent rect. 8 1
62 31.37 wind 5 10 > th dose dependent rect. 8 1
172 38.09 humidity 80 90 < th dose dependent rect. 6 1
176 38.57 wind 3 90 > th dose dependent rect. 6 1
182 38.94 humidity 80 270 < th dose independent rect. 5 2
199 42.25 wind 3 90 > th dose independent rect. 6 1
212 42.77 wind 5 10 > th dose independent rect. 24 9
233 44.03 wind 5 10 > th dose independent rect. 5 4
246 44.28 humidity 80 1440 > th dose independent rect. 3 3
301 44.81 humidity 80 720 > th dose independent rect. 23 8
338 45.44 wind 5 10 > th dose dependent rect. 24 9
366 45.73 wind 5 10 > th dose dependent rect. 3 6
422 46.32 radiation 10 10 < th dose independent rect. 8 1
705 48.83 humidity 80 720 < th dose independent sin 9 NA
787 49.32 temperature 20 90 > th dose independent sin 0 NA
791 49.34 temperature 20 90 < th dose independent sin 0 NA
822 49.53 humidity 80 720 > th dose independent sin 9 NA
961 50.35 humidity 70 720 > th dose dependent rect. 23 6
966 50.39 humidity 60 1440 > th dose dependent rect. 4 1