Os07g0671100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0671100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.53 | 0.366 | 2.19 | 5.36 | 0.154 | -71.2 | 0.187 | 437 | 0.0597 | 15.1 | 994.9 | 674 | -- | -- |
| 78.39 | 0.416 | 3.06 | 0.178 | 0.112 | 0.13 | 0.0682 | -- | 0.0462 | 15.5 | 994.9 | 674 | -- | -- |
| 59.8 | 0.36 | 2.27 | 5.01 | 0.103 | -71.5 | -- | 439 | 0.0178 | 13.5 | 994.7 | 674 | -- | -- |
| 73.14 | 0.398 | 3.05 | 0.203 | 0.144 | 1.02 | -- | -- | 0.0766 | 15.7 | 994.8 | 619 | -- | -- |
| 60.48 | 0.362 | 2.27 | 4.92 | -- | -71.7 | -- | 440 | 0.0522 | -- | 994.5 | 694 | -- | -- |
| 78.41 | 0.415 | 3.06 | 0.179 | 0.114 | -- | 0.0723 | -- | 0.0459 | 15.5 | -- | -- | -- | -- |
| 78.42 | 0.415 | 3.06 | 0.18 | 0.114 | -- | -- | -- | 0.0463 | 15.5 | -- | -- | -- | -- |
| 73.77 | 0.4 | 3.05 | 0.148 | -- | 1.05 | -- | -- | 0.0549 | -- | 994.5 | 693 | -- | -- |
| 73.53 | 0.399 | 3.06 | -- | 0.118 | 1.09 | -- | -- | 0.0414 | 14.3 | 994.6 | 704 | -- | -- |
| 79.15 | 0.416 | 3.06 | 0.175 | -- | -- | -- | -- | 0.0433 | -- | -- | -- | -- | -- |
| 79.28 | 0.417 | 3.06 | -- | 0.11 | -- | -- | -- | 0.0262 | 15.5 | -- | -- | -- | -- |
| 74.35 | 0.402 | 3.06 | -- | -- | 1.07 | -- | -- | 0.0388 | -- | 994.6 | 698 | -- | -- |
| 79.96 | 0.417 | 3.06 | -- | -- | -- | -- | -- | 0.0238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.74 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 1 |
| 2 | 59.06 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 3 | 59.08 | atmosphere | 995 | 720 | < th | dose independent | rect. | 14 | 1 |
| 44 | 59.08 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 85 | 59.24 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 1 |
| 92 | 59.24 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 122 | 60.08 | atmosphere | 995 | 720 | < th | dose independent | sin | 6 | NA |
| 125 | 60.72 | atmosphere | 995 | 720 | > th | dose independent | sin | 5 | NA |
| 126 | 60.84 | atmosphere | 995 | 720 | < th | dose dependent | sin | 7 | NA |
| 209 | 64.42 | atmosphere | 995 | 720 | > th | dose independent | no | NA | NA |
| 242 | 65.08 | atmosphere | 995 | 720 | < th | dose independent | no | NA | NA |
| 433 | 65.13 | atmosphere | 995 | 720 | > th | dose independent | sin | 22 | NA |
| 462 | 65.53 | atmosphere | 995 | 720 | > th | dose independent | sin | 17 | NA |
| 465 | 65.58 | atmosphere | 995 | 720 | < th | dose dependent | no | NA | NA |
| 726 | 66.74 | atmosphere | 995 | 720 | > th | dose independent | sin | 13 | NA |
| 745 | 67.93 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 955 | 71.53 | atmosphere | 995 | 720 | > th | dose independent | rect. | 13 | 16 |