Os07g0670000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0670000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.08 | 0.613 | 7.62 | 1.19 | 2.36 | 1.23 | 1.24 | -0.412 | 0.0312 | 20 | 1010 | 6472 | -- | -- |
| 170.48 | 0.608 | 7.63 | 1.11 | 2.35 | 1.26 | 1.23 | -- | 0.00294 | 20 | 1010 | 6481 | -- | -- |
| 174.61 | 0.615 | 7.62 | 1.13 | 2.36 | 1.22 | -- | -0.336 | 0.0262 | 20 | 1010 | 6471 | -- | -- |
| 174.87 | 0.616 | 7.63 | 1.04 | 2.36 | 1.24 | -- | -- | 0.0136 | 20.1 | 1010 | 6468 | -- | -- |
| 476.45 | 1.02 | 7.55 | 1.17 | -- | 1.31 | -- | -0.622 | 0.0136 | -- | 1010 | 5603 | -- | -- |
| 218.96 | 0.694 | 7.68 | 0.614 | 2.38 | -- | 1.1 | -- | -0.204 | 20 | -- | -- | -- | -- |
| 222.52 | 0.699 | 7.68 | 0.583 | 2.38 | -- | -- | -- | -0.204 | 20 | -- | -- | -- | -- |
| 476.77 | 1.02 | 7.57 | 1 | -- | 1.36 | -- | -- | -0.0287 | -- | 1010 | 5604 | -- | -- |
| 200.55 | 0.66 | 7.61 | -- | 2.39 | 1.03 | -- | -- | 0.0562 | 20.1 | 1010 | 9751 | -- | -- |
| 530.64 | 1.08 | 7.62 | 0.56 | -- | -- | -- | -- | -0.234 | -- | -- | -- | -- | -- |
| 231.49 | 0.712 | 7.69 | -- | 2.37 | -- | -- | -- | -0.269 | 20 | -- | -- | -- | -- |
| 500.73 | 1.04 | 7.56 | -- | -- | 1.02 | -- | -- | -0.0414 | -- | 1010 | 9813 | -- | -- |
| 538.91 | 1.08 | 7.63 | -- | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.52 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 2 | 163.16 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 3 | 163.19 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 6 | 163.57 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 9 | 163.76 | wind | 3 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 22 | 164.22 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 50 | 164.76 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 51 | 164.82 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 78 | 165.18 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 115 | 165.45 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 121 | 165.49 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 127 | 165.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 132 | 165.54 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 134 | 165.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 145 | 165.59 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 150 | 165.60 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 162 | 165.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 166 | 165.68 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 168 | 165.69 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 169 | 165.69 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 173 | 165.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 177 | 165.73 | humidity | 90 | 43200 | < th | dose independent | sin | 20 | NA |
| 184 | 165.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 187 | 165.77 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 192 | 165.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 200 | 165.81 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 209 | 165.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 214 | 165.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 229 | 165.89 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 263 | 165.96 | humidity | 90 | 43200 | > th | dose independent | sin | 20 | NA |
| 280 | 166.01 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 302 | 166.08 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 306 | 166.08 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 7 | NA |
| 339 | 166.15 | humidity | 50 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 402 | 166.29 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 434 | 166.35 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 439 | 166.36 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 441 | 166.36 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 451 | 166.39 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 513 | 166.48 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 527 | 166.50 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 18 |
| 599 | 166.62 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 623 | 166.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 649 | 166.68 | temperature | 15 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 670 | 166.70 | temperature | 20 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 709 | 166.76 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 716 | 166.77 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 796 | 166.83 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 808 | 166.85 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 5 | NA |
| 813 | 166.85 | atmosphere | 1005 | 43200 | > th | dose dependent | no | NA | NA |
| 855 | 166.89 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 868 | 166.90 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 872 | 166.91 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 876 | 166.91 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 900 | 166.93 | humidity | 90 | 43200 | > th | dose dependent | rect. | 7 | 18 |
| 912 | 166.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 922 | 166.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 935 | 166.97 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 21 | NA |
| 947 | 166.97 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 951 | 166.98 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 22 | 1 |