Os07g0669900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os07g0669900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.77 | 0.252 | 11.2 | 0.132 | 1.33 | -0.192 | 0.0739 | -1.42 | 0.319 | 5.07 | 22.98 | 1753 | -- | -- |
| 32.33 | 0.265 | 11.3 | -0.397 | 1.32 | -0.299 | -0.0234 | -- | 0.171 | 5.08 | 24.13 | 2860 | -- | -- |
| 28.22 | 0.247 | 11.2 | 0.0556 | 1.35 | -0.299 | -- | -1.49 | 0.299 | 5.04 | 22 | 1728 | -- | -- |
| 32.25 | 0.264 | 11.3 | -0.41 | 1.29 | -0.295 | -- | -- | 0.173 | 5.11 | 24.2 | 2775 | -- | -- |
| 114.79 | 0.499 | 11.2 | 0.029 | -- | -0.472 | -- | -1.51 | 0.262 | -- | 24.02 | 2736 | -- | -- |
| 35.23 | 0.278 | 11.3 | -0.304 | 1.34 | -- | 0.0425 | -- | 0.267 | 5.07 | -- | -- | -- | -- |
| 35.23 | 0.278 | 11.3 | -0.304 | 1.34 | -- | -- | -- | 0.267 | 5.07 | -- | -- | -- | -- |
| 117.97 | 0.506 | 11.3 | -0.517 | -- | -0.583 | -- | -- | 0.0745 | -- | 24.12 | 2719 | -- | -- |
| 35.36 | 0.277 | 11.2 | -- | 1.33 | -0.213 | -- | -- | 0.335 | 5.1 | 31.49 | 2750 | -- | -- |
| 129.27 | 0.531 | 11.3 | -0.256 | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
| 37.67 | 0.287 | 11.2 | -- | 1.33 | -- | -- | -- | 0.3 | 5.07 | -- | -- | -- | -- |
| 123.56 | 0.518 | 11.3 | -- | -- | -0.434 | -- | -- | 0.205 | -- | 24.2 | 2702 | -- | -- |
| 131 | 0.534 | 11.3 | -- | -- | -- | -- | -- | 0.329 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 3 | 27.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 10 |
| 62 | 27.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 95 | 27.58 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 156 | 28.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 169 | 28.24 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 215 | 28.45 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 220 | 28.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 233 | 28.49 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 242 | 28.51 | temperature | 25 | 1440 | < th | dose independent | sin | 12 | NA |
| 312 | 28.63 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 498 | 28.86 | temperature | 25 | 1440 | > th | dose independent | sin | 12 | NA |
| 516 | 28.87 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 573 | 28.92 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 835 | 29.13 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 872 | 29.16 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 987 | 29.24 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |