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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0669800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.79 (0.0417) R2 : 0.371
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.78 (0.109) R2dC : 0.369 R2C : 0.364
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.178 (0.0877) R2dN8 : 0.00737 R2N8 : 0.00211
σ : 0.786
deviance : 282.07
__
_____
C
peak time of C : 5.53
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
260.31 0.758 4.61 0.957 1.78 -0.546 -0.267 -4 0.0531 5.54 19.4 4887 -- --
272.41 0.769 4.77 0.549 1.8 0.699 -0.481 -- -0.0995 5.57 16.43 5899 -- --
260.48 0.752 4.61 0.956 1.78 -0.548 -- -4 0.0536 5.55 19.36 4891 -- --
267.49 0.762 4.77 0.72 1.73 0.627 -- -- -0.0829 5.53 8.894 43629 -- --
423.52 0.958 4.62 0.891 -- -0.821 -- -4.17 0.0622 -- 19.3 5739 -- --
279.55 0.784 4.78 0.296 1.78 -- -0.3 -- -0.147 5.52 -- -- -- --
279.77 0.783 4.78 0.295 1.77 -- -- -- -0.145 5.54 -- -- -- --
429.8 0.966 4.77 0.982 -- 0.876 -- -- 0.0681 -- 8.981 47520 -- --
278.47 0.777 4.78 -- 1.78 0.338 -- -- -0.145 5.52 7.822 47520 -- --
443.52 0.984 4.81 0.353 -- -- -- -- -0.102 -- -- -- -- --
282.07 0.786 4.79 -- 1.78 -- -- -- -0.178 5.53 -- -- -- --
443.74 0.981 4.81 -- -- 0.312 -- -- -0.111 -- 8.445 47520 -- --
446.81 0.987 4.82 -- -- -- -- -- -0.142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 252.73 temperature 20 4320 > th dose independent rect. 22 1
3 253.30 temperature 20 4320 < th dose independent rect. 21 2
24 257.09 wind 3 43200 < th dose dependent rect. 23 2
35 257.56 temperature 15 4320 > th dose dependent rect. 24 2
57 258.18 atmosphere 1005 14400 > th dose independent rect. 13 1
63 258.21 temperature 30 4320 < th dose dependent rect. 24 2
70 258.27 temperature 20 1440 > th dose dependent rect. 24 8
110 258.51 atmosphere 1015 43200 > th dose dependent rect. 24 1
118 258.55 temperature 30 4320 < th dose dependent rect. 21 6
139 258.68 atmosphere 1005 14400 < th dose independent rect. 13 1
208 258.96 temperature 20 4320 < th dose independent sin 14 NA
228 259.05 atmosphere 1015 14400 > th dose independent rect. 17 8
235 259.06 atmosphere 1015 14400 > th dose independent rect. 16 10
236 259.06 atmosphere 1015 14400 < th dose independent rect. 16 10
244 259.08 atmosphere 1015 14400 < th dose independent rect. 17 7
246 259.08 atmosphere 1015 14400 < th dose independent rect. 15 12
248 259.09 atmosphere 1015 14400 > th dose independent sin 15 NA
249 259.09 atmosphere 1015 14400 < th dose independent sin 15 NA
250 259.09 atmosphere 1015 14400 > th dose independent rect. 19 3
251 259.09 atmosphere 1015 14400 < th dose independent rect. 18 5
259 259.10 atmosphere 1015 14400 > th dose independent rect. 18 5
270 259.12 atmosphere 1015 14400 > th dose independent rect. 14 15
299 259.15 atmosphere 1015 14400 < th dose independent rect. 6 18
322 259.17 temperature 25 4320 < th dose dependent rect. 21 1
354 259.19 atmosphere 1015 14400 > th dose independent rect. 5 19
423 259.22 temperature 20 1440 > th dose dependent sin 9 NA
425 259.22 atmosphere 1015 14400 > th dose dependent rect. 21 9
449 259.24 wind 1 14400 < th dose independent rect. 19 7
475 259.25 atmosphere 1015 14400 > th dose dependent rect. 20 12
526 259.29 atmosphere 1015 14400 > th dose dependent rect. 19 15
547 259.31 atmosphere 1015 14400 > th dose independent no NA NA
548 259.31 atmosphere 1015 14400 > th dose independent rect. 20 1
555 259.31 atmosphere 1015 14400 > th dose dependent sin 10 NA
562 259.32 atmosphere 1015 43200 < th dose independent rect. 3 1
567 259.32 atmosphere 1015 14400 > th dose independent rect. 22 23
573 259.33 atmosphere 1015 14400 < th dose independent no NA NA
582 259.33 atmosphere 1015 14400 < th dose independent rect. 21 23
592 259.34 radiation 1 43200 < th dose independent rect. 16 1
608 259.35 radiation 1 43200 > th dose independent rect. 16 1
627 259.36 temperature 20 4320 > th dose independent sin 14 NA
665 259.39 humidity 60 43200 < th dose independent rect. 9 3
687 259.41 atmosphere 1005 14400 < th dose independent rect. 9 8
719 259.43 atmosphere 1015 14400 < th dose independent rect. 8 7
725 259.44 atmosphere 1015 14400 < th dose independent sin 1 NA
727 259.44 atmosphere 1015 14400 < th dose independent rect. 9 5
746 259.46 atmosphere 1015 14400 > th dose independent sin 1 NA
749 259.46 atmosphere 1015 14400 < th dose independent rect. 7 9
752 259.46 atmosphere 1015 14400 < th dose independent rect. 5 12
766 259.47 atmosphere 1015 14400 > th dose independent rect. 9 5
767 259.47 atmosphere 1015 14400 > th dose independent rect. 8 7
768 259.47 atmosphere 1015 14400 > th dose independent rect. 6 10
770 259.47 atmosphere 1015 14400 > th dose independent rect. 5 12
771 259.47 atmosphere 1015 14400 < th dose independent rect. 4 14
779 259.47 atmosphere 1015 14400 > th dose dependent rect. 10 1
780 259.47 atmosphere 1015 14400 > th dose dependent rect. 9 3
781 259.47 atmosphere 1015 14400 > th dose dependent rect. 8 5
786 259.48 atmosphere 1015 14400 > th dose independent rect. 4 14
799 259.48 atmosphere 1015 14400 > th dose dependent sin 2 NA
804 259.48 atmosphere 1015 14400 > th dose dependent rect. 5 11
807 259.48 atmosphere 1015 14400 > th dose dependent rect. 3 14
813 259.49 atmosphere 1015 14400 > th dose independent rect. 10 3
826 259.49 atmosphere 1010 14400 > th dose dependent rect. 16 2
830 259.49 atmosphere 1015 14400 > th dose dependent rect. 7 7
831 259.49 atmosphere 1015 14400 > th dose dependent rect. 6 9
859 259.51 atmosphere 1015 43200 > th dose independent rect. 4 1
860 259.51 atmosphere 1015 14400 < th dose independent rect. 10 3
960 259.57 atmosphere 1015 43200 < th dose independent rect. 23 6
988 259.59 humidity 70 43200 < th dose independent rect. 8 1
991 259.59 atmosphere 1015 43200 > th dose independent rect. 10 9