Os07g0669700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Potassium transporter 7 (OsHAK7).
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Os07g0669700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Potassium transporter 7 (OsHAK7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.02 | 0.399 | 12.6 | 1.12 | 1.19 | -1.06 | -0.534 | 0.622 | 0.734 | 1.99 | 10.01 | 1410 | -- | -- |
| 72.72 | 0.397 | 12.6 | 1.07 | 1.18 | -1.07 | -0.493 | -- | 0.723 | 1.86 | 10.01 | 1395 | -- | -- |
| 73.09 | 0.398 | 12.6 | 1.12 | 1.19 | -1.07 | -- | 0.598 | 0.734 | 1.94 | 10.01 | 1403 | -- | -- |
| 73.47 | 0.399 | 12.6 | 1.08 | 1.21 | -1.07 | -- | -- | 0.73 | 1.87 | 10 | 1382 | -- | -- |
| 94.13 | 0.452 | 12.5 | 0.8 | -- | -0.992 | -- | 0.619 | 0.566 | -- | 2.16 | 231 | -- | -- |
| 103.65 | 0.477 | 12.6 | 0.693 | 1.11 | -- | -0.715 | -- | 0.389 | 2.1 | -- | -- | -- | -- |
| 105.59 | 0.481 | 12.6 | 0.714 | 1.1 | -- | -- | -- | 0.393 | 2.08 | -- | -- | -- | -- |
| 91.62 | 0.446 | 12.6 | 0.74 | -- | -1.02 | -- | -- | 0.442 | -- | 3.79 | 279 | -- | -- |
| 94.15 | 0.452 | 12.6 | -- | 1.3 | -0.991 | -- | -- | 0.533 | 1.74 | 3.88 | 1363 | -- | -- |
| 178.77 | 0.625 | 12.6 | 0.76 | -- | -- | -- | -- | 0.419 | -- | -- | -- | -- | -- |
| 119.04 | 0.51 | 12.7 | -- | 1.12 | -- | -- | -- | 0.314 | 2.09 | -- | -- | -- | -- |
| 106.2 | 0.48 | 12.6 | -- | -- | -1.02 | -- | -- | 0.351 | -- | 3.829 | 281 | -- | -- |
| 194.03 | 0.65 | 12.6 | -- | -- | -- | -- | -- | 0.335 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 3 | 69.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 6 | 70.10 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 8 | 70.47 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 11 | 70.58 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 15 | 70.74 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 16 | 70.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 18 | 70.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 19 | 70.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 41 | 70.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 42 | 70.97 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 49 | 71.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 99 | 71.32 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 113 | 71.55 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 129 | 71.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 154 | 71.69 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 161 | 71.76 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 233 | 71.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 234 | 71.98 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 247 | 72.05 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 252 | 72.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 253 | 72.06 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 349 | 72.19 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 352 | 72.19 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 381 | 72.28 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 389 | 72.30 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 392 | 72.31 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 398 | 72.31 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 515 | 72.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 526 | 72.39 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 531 | 72.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 535 | 72.40 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 609 | 72.47 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 628 | 72.50 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 679 | 72.59 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 734 | 72.63 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 738 | 72.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 739 | 72.64 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 747 | 72.64 | temperature | 30 | 14400 | < th | dose independent | rect. | 20 | 21 |
| 759 | 72.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 774 | 72.66 | temperature | 25 | 14400 | > th | dose dependent | sin | 17 | NA |
| 786 | 72.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 811 | 72.69 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 821 | 72.70 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 827 | 72.70 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 855 | 72.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 915 | 72.75 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 927 | 72.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 933 | 72.76 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 941 | 72.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 944 | 72.77 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 953 | 72.77 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 999 | 72.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 19 |