Os07g0669000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Catalytic subunit of polymerase zeta.
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Os07g0669000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Catalytic subunit of polymerase zeta.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.34 | 0.582 | 2.81 | 0.292 | 0.213 | 2.08 | 0.942 | 5.64 | 0.0576 | 8.24 | 23.2 | 84 | 18.5 | 2.43 |
| 181.56 | 0.628 | 2.8 | 0.526 | 0.208 | 2.49 | -0.0924 | -- | 0.13 | 8.07 | 22.22 | 86 | 18.4 | 2.53 |
| 155.16 | 0.58 | 2.81 | 0.339 | 0.23 | 2.13 | -- | 5.18 | 0.059 | 6.83 | 23.15 | 80 | 18.4 | 2.43 |
| 180.46 | 0.626 | 2.81 | 0.468 | 0.233 | 2.26 | -- | -- | 0.0835 | 7.07 | 22.28 | 81 | 18.4 | 2.5 |
| 157.77 | 0.585 | 2.82 | 0.344 | -- | 2 | -- | 5.18 | 0.0622 | -- | 23.01 | 77 | 18.4 | 2.48 |
| 207.89 | 0.676 | 2.82 | 0.425 | 0.0856 | -- | -0.577 | -- | 0.03 | 4.51 | -- | -- | -- | -- |
| 208.79 | 0.677 | 2.82 | 0.429 | 0.0825 | -- | -- | -- | 0.0331 | 4.79 | -- | -- | -- | -- |
| 180.74 | 0.626 | 2.82 | 0.515 | -- | 2.13 | -- | -- | 0.111 | -- | 22.1 | 52 | 18.5 | 2.59 |
| 186.24 | 0.636 | 2.8 | -- | 0.221 | 2.26 | -- | -- | 0.0773 | 6.77 | 22.2 | 80 | 18.4 | 2.47 |
| 209.15 | 0.676 | 2.82 | 0.432 | -- | -- | -- | -- | 0.0352 | -- | -- | -- | -- | -- |
| 213.64 | 0.684 | 2.83 | -- | 0.0904 | -- | -- | -- | -0.0147 | 4.65 | -- | -- | -- | -- |
| 185.03 | 0.634 | 2.81 | -- | -- | 2.1 | -- | -- | 0.045 | -- | 22.11 | 42 | 18.6 | 2.78 |
| 214.07 | 0.683 | 2.83 | -- | -- | -- | -- | -- | -0.0127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.47 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 14 | 165.56 | temperature | 25.0 | 90 | < th | dose independent | rect. | 18 | 3 |
| 16 | 166.57 | temperature | 25.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 19 | 166.65 | temperature | 25.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 58 | 179.74 | humidity | 70.0 | 90 | > th | dose independent | rect. | 19 | 1 |
| 72 | 180.99 | temperature | 20.0 | 10 | < th | dose independent | rect. | 7 | 13 |
| 92 | 182.14 | humidity | 80.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 104 | 182.74 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 107 | 182.77 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 18 | 3 |
| 109 | 182.85 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 19 | 1 |
| 127 | 183.64 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 11 | 10 |
| 134 | 183.75 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 141 | 184.17 | wind | 7.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 144 | 184.25 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 7 | 14 |
| 154 | 184.43 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 160 | 184.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 163 | 184.50 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 167 | 184.50 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 173 | 184.50 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 177 | 184.50 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 197 | 184.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 275 | 184.95 | wind | 7.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 308 | 185.77 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 1 |
| 321 | 186.05 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 1 |
| 322 | 186.05 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 1 |
| 345 | 186.68 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 19 | 1 |
| 360 | 187.05 | temperature | 20.0 | 10 | < th | dose independent | sin | 22 | NA |
| 363 | 187.12 | wind | 9.0 | 90 | < th | dose dependent | rect. | 19 | 1 |
| 371 | 187.24 | wind | 1.0 | 90 | > th | dose independent | rect. | 19 | 1 |
| 375 | 187.33 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 1 |
| 376 | 187.33 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 1 |
| 379 | 187.33 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 1 |
| 382 | 187.33 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 1 |
| 384 | 187.33 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 1 |
| 390 | 187.33 | temperature | 10.0 | 90 | > th | dose independent | rect. | 20 | 23 |
| 391 | 187.33 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 1 |
| 401 | 187.46 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 4 |
| 407 | 187.56 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 19 | 1 |
| 417 | 187.56 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 429 | 187.63 | temperature | 20.0 | 10 | > th | dose independent | sin | 22 | NA |
| 438 | 187.86 | wind | 9.0 | 90 | < th | dose independent | rect. | 20 | 23 |
| 451 | 188.11 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 5 |
| 452 | 188.11 | radiation | 1.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 468 | 188.34 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 18 | 3 |
| 489 | 188.75 | radiation | 1.0 | 90 | < th | dose independent | rect. | 18 | 3 |
| 524 | 188.99 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 21 | 22 |
| 530 | 189.09 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 549 | 189.37 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 4 |
| 595 | 189.64 | temperature | 25.0 | 90 | < th | dose independent | rect. | 11 | 10 |
| 636 | 189.79 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 21 | 22 |
| 637 | 189.79 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 21 | 22 |
| 659 | 189.93 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 17 |
| 953 | 191.24 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 957 | 191.28 | radiation | 10.0 | 90 | < th | dose independent | rect. | 18 | 18 |