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Os07g0668900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.63 (0.0142) R2 : 0.699
β1 : 0.75 (0.0518) R2dD : 0.144 R2D : 0.121
β2 : 1.06 (0.0369) R2dC : 0.546 R2C : 0.553
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.146 (0.0302) R2dN8 : 0.0207 R2N8 : 0.000213
σ : 0.266
deviance : 32.27
__
_____
C
peak time of C : 5.86
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.08 0.249 9.64 0.591 1.07 -0.0393 -0.0754 1.52 0.103 5.8 9.829 1390 -- --
30.85 0.259 9.63 0.589 1.06 0.155 0.000662 -- 0.18 5.72 6.59 11470 -- --
28.1 0.247 9.64 0.59 1.07 -0.0388 -- 1.52 0.103 5.8 9.799 1390 -- --
28.69 0.249 9.6 0.911 1.03 0.404 -- -- 0.28 5.69 3.195 12774 -- --
33.84 0.271 9.66 0.926 -- 1.21 -- 0.243 0.188 -- 1.629 728 -- --
32.26 0.266 9.63 0.751 1.06 -- -0.0535 -- 0.146 5.86 -- -- -- --
32.27 0.266 9.63 0.75 1.06 -- -- -- 0.146 5.86 -- -- -- --
33.49 0.27 9.66 0.828 -- 1.29 -- -- 0.182 -- 1.793 733 -- --
44.8 0.312 9.63 -- 1.01 0.381 -- -- 0.207 5.59 29.92 9536 -- --
90.54 0.445 9.65 0.782 -- -- -- -- 0.171 -- -- -- -- --
47.1 0.321 9.65 -- 1.07 -- -- -- 0.0627 5.83 -- -- -- --
51.85 0.335 9.66 -- -- 1.25 -- -- 0.113 -- 2.941 716 -- --
106.68 0.482 9.67 -- -- -- -- -- 0.0841 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.03 humidity 90.0 14400 > th dose dependent rect. 6 1
2 27.04 temperature 20.0 270 > th dose independent rect. 22 12
8 27.53 temperature 15.0 270 > th dose dependent rect. 22 12
13 27.60 humidity 90.0 14400 > th dose dependent rect. 5 10
16 27.62 humidity 90.0 14400 > th dose independent rect. 6 1
22 27.70 wind 3.0 43200 > th dose independent rect. 7 2
23 27.70 wind 3.0 43200 < th dose independent rect. 7 2
26 27.71 wind 5.0 43200 < th dose dependent rect. 7 2
27 27.72 wind 1.0 43200 > th dose dependent rect. 7 2
29 27.74 wind 9.0 43200 < th dose dependent rect. 7 2
37 27.78 humidity 90.0 14400 < th dose independent rect. 24 18
58 27.85 temperature 20.0 720 > th dose independent rect. 22 4
76 27.88 precipitation 0.1 43200 > th dose dependent rect. 7 1
78 27.89 precipitation 0.1 43200 > th dose independent rect. 7 1
87 27.90 temperature 20.0 270 < th dose independent rect. 22 10
88 27.90 humidity 90.0 14400 > th dose independent rect. 24 18
92 27.90 wind 3.0 43200 < th dose dependent rect. 3 6
94 27.91 radiation 10.0 4320 < th dose independent rect. 17 1
95 27.91 humidity 90.0 14400 < th dose independent rect. 6 2
104 27.92 radiation 10.0 4320 > th dose dependent rect. 17 1
129 27.94 humidity 90.0 14400 < th dose independent sin 4 NA
131 27.94 precipitation 0.1 43200 < th dose independent rect. 7 1
133 27.94 humidity 90.0 14400 < th dose independent rect. 13 19
138 27.94 precipitation 0.1 43200 < th dose dependent rect. 7 1
165 27.98 temperature 20.0 270 < th dose independent rect. 23 7
174 27.98 precipitation 0.1 43200 > th dose dependent rect. 24 8
184 27.99 humidity 90.0 14400 > th dose dependent sin 1 NA
214 28.02 humidity 90.0 14400 < th dose independent rect. 6 23
220 28.02 precipitation 0.1 43200 > th dose dependent rect. 1 6
221 28.03 humidity 90.0 14400 > th dose independent sin 3 NA
233 28.04 humidity 90.0 14400 < th dose independent no NA NA
236 28.04 precipitation 0.1 43200 > th dose independent rect. 24 8
252 28.05 precipitation 0.1 43200 < th dose independent rect. 24 8
267 28.05 precipitation 0.1 43200 < th dose dependent rect. 24 8
269 28.06 radiation 10.0 4320 < th dose independent rect. 17 3
275 28.06 humidity 90.0 14400 < th dose independent rect. 16 23
291 28.07 humidity 90.0 14400 < th dose independent rect. 2 23
302 28.08 precipitation 0.1 43200 > th dose independent rect. 1 6
324 28.08 humidity 80.0 14400 > th dose dependent rect. 14 19
329 28.09 precipitation 0.1 43200 < th dose independent rect. 1 6
341 28.09 humidity 90.0 14400 > th dose independent rect. 12 20
350 28.09 precipitation 0.1 43200 < th dose dependent rect. 1 6
362 28.10 humidity 90.0 14400 < th dose independent rect. 24 11
381 28.11 humidity 90.0 14400 < th dose independent rect. 2 7
415 28.11 radiation 10.0 1440 < th dose dependent rect. 12 22
430 28.12 humidity 90.0 14400 > th dose independent rect. 5 22
437 28.12 humidity 80.0 14400 > th dose dependent rect. 22 2
454 28.12 humidity 80.0 14400 > th dose dependent rect. 21 20
487 28.14 humidity 90.0 14400 > th dose independent no NA NA
512 28.14 humidity 50.0 14400 > th dose dependent rect. 22 2
519 28.14 humidity 80.0 14400 > th dose dependent rect. 20 14
526 28.15 humidity 90.0 14400 < th dose independent rect. 16 1
584 28.16 humidity 90.0 14400 > th dose independent rect. 16 23
601 28.17 humidity 90.0 14400 < th dose independent rect. 14 4
611 28.17 humidity 90.0 14400 > th dose independent rect. 12 15
636 28.18 humidity 90.0 14400 > th dose independent rect. 17 1
652 28.18 humidity 80.0 14400 > th dose dependent sin 7 NA
656 28.18 humidity 80.0 14400 > th dose dependent rect. 21 4
692 28.19 humidity 80.0 14400 > th dose dependent sin 12 NA
720 28.19 radiation 10.0 1440 < th dose dependent rect. 7 23
778 28.21 humidity 80.0 14400 > th dose dependent no NA NA
804 28.22 humidity 90.0 14400 > th dose independent rect. 4 7
831 28.22 humidity 80.0 14400 > th dose dependent rect. 14 13
842 28.22 humidity 80.0 14400 > th dose dependent rect. 4 23
847 28.23 precipitation 0.1 43200 < th dose independent rect. 3 1
872 28.23 precipitation 0.1 43200 < th dose dependent rect. 3 1
897 28.23 humidity 80.0 14400 > th dose dependent rect. 2 23
901 28.23 radiation 10.0 1440 < th dose dependent rect. 16 23
946 28.24 radiation 10.0 1440 < th dose dependent rect. 7 12
975 28.25 radiation 20.0 1440 < th dose independent rect. 11 23