Os07g0668000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclin dependent kinase C.
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Os07g0668000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclin dependent kinase C.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.93 | 0.265 | 11 | 0.0183 | 0.755 | 0.414 | -0.552 | 2.03 | -0.133 | 7.58 | 19.71 | 2437 | -- | -- |
| 34.93 | 0.275 | 11 | -0.62 | 0.762 | 0.523 | -0.732 | -- | -0.307 | 7.58 | 21.67 | 2456 | -- | -- |
| 32.64 | 0.266 | 11 | 0.0358 | 0.773 | 0.399 | -- | 2.12 | -0.124 | 7.47 | 20.3 | 2296 | -- | -- |
| 35.67 | 0.278 | 11 | -0.549 | 0.78 | 0.504 | -- | -- | -0.269 | 7.55 | 23.5 | 2389 | -- | -- |
| 61.26 | 0.365 | 11 | 0.131 | -- | 0.348 | -- | 2.15 | -0.0932 | -- | 21 | 2823 | -- | -- |
| 42.7 | 0.306 | 11 | -0.378 | 0.736 | -- | -0.637 | -- | -0.183 | 7.32 | -- | -- | -- | -- |
| 43.74 | 0.31 | 11 | -0.393 | 0.738 | -- | -- | -- | -0.182 | 7.17 | -- | -- | -- | -- |
| 64.15 | 0.373 | 11 | -0.552 | -- | 0.5 | -- | -- | -0.0978 | -- | 29.4 | 5780 | -- | -- |
| 43.19 | 0.306 | 11 | -- | 0.748 | 0.358 | -- | -- | -0.165 | 7.52 | 24.4 | 2447 | -- | -- |
| 72.51 | 0.398 | 11 | -0.379 | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
| 47.81 | 0.323 | 11 | -- | 0.734 | -- | -- | -- | -0.139 | 7.2 | -- | -- | -- | -- |
| 70.37 | 0.391 | 11 | -- | -- | 0.398 | -- | -- | -0.0535 | -- | 30.1 | 4317 | -- | -- |
| 76.31 | 0.408 | 11 | -- | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 4 | 30.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 7 | 30.99 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 12 | 31.02 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 15 | 31.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 45 | 31.35 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 67 | 31.48 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 77 | 31.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 128 | 31.69 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 159 | 31.77 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 162 | 31.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 16 |
| 184 | 31.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 11 |
| 278 | 31.94 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 312 | 31.99 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 330 | 32.00 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 404 | 32.10 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 421 | 32.12 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 443 | 32.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 452 | 32.16 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 474 | 32.18 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 479 | 32.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 573 | 32.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 597 | 32.30 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 19 |
| 604 | 32.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 629 | 32.32 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 11 |
| 647 | 32.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 660 | 32.34 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 16 |
| 696 | 32.36 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 17 |
| 783 | 32.41 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 974 | 32.50 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |