Os07g0665000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Short-chain alcohol dehydrogenase.
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Os07g0665000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Short-chain alcohol dehydrogenase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.68 | 0.471 | 9.4 | 1.22 | 2.41 | 0.933 | -0.779 | 0.0833 | 0.514 | 23.3 | 40 | 83 | -- | -- |
| 100.68 | 0.467 | 9.4 | 1.21 | 2.43 | 0.923 | -0.742 | -- | 0.507 | 23.3 | 40 | 82 | -- | -- |
| 102.21 | 0.471 | 9.39 | 1.21 | 2.53 | 0.891 | -- | -0.487 | 0.493 | 23.3 | 44.11 | 83 | -- | -- |
| 102.9 | 0.472 | 9.4 | 1.24 | 2.43 | 0.937 | -- | -- | 0.512 | 23.3 | 40.88 | 82 | -- | -- |
| 168.97 | 0.609 | 9.35 | 1.22 | -- | 2.4 | -- | -0.678 | 0.486 | -- | 11.75 | 22 | -- | -- |
| 114.46 | 0.502 | 9.42 | 1.19 | 3.07 | -- | -0.655 | -- | 0.454 | 23.6 | -- | -- | -- | -- |
| 116.32 | 0.505 | 9.42 | 1.21 | 3.07 | -- | -- | -- | 0.457 | 23.6 | -- | -- | -- | -- |
| 162.13 | 0.593 | 9.35 | 1.18 | -- | 2.4 | -- | -- | 0.499 | -- | 10.63 | 7 | -- | -- |
| 142.57 | 0.556 | 9.44 | -- | 2.51 | 1.05 | -- | -- | 0.364 | 23.4 | 60 | 77 | -- | -- |
| 707.94 | 1.24 | 9.35 | 1.3 | -- | -- | -- | -- | 0.492 | -- | -- | -- | -- | -- |
| 155.18 | 0.583 | 9.45 | -- | 3.08 | -- | -- | -- | 0.322 | 23.6 | -- | -- | -- | -- |
| 199.04 | 0.657 | 9.38 | -- | -- | 2.4 | -- | -- | 0.39 | -- | 10 | 8 | -- | -- |
| 752.52 | 1.28 | 9.38 | -- | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.10 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 4 | 97.27 | radiation | 10.0 | 270 | < th | dose independent | rect. | 23 | 20 |
| 12 | 98.03 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 13 | 98.16 | radiation | 10.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 23 | 98.40 | radiation | 20.0 | 90 | < th | dose independent | rect. | 15 | 20 |
| 26 | 98.46 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 14 | 21 |
| 27 | 98.52 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 49 | 98.90 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 51 | 98.93 | radiation | 10.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 68 | 98.96 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 83 | 99.09 | radiation | 10.0 | 270 | < th | dose independent | sin | 3 | NA |
| 87 | 99.12 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 92 | 99.20 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 100 | 99.26 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 9 | 7 |
| 119 | 99.46 | radiation | 20.0 | 10 | < th | dose independent | rect. | 16 | 19 |
| 146 | 99.69 | radiation | 30.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 181 | 99.83 | radiation | 30.0 | 90 | < th | dose independent | rect. | 1 | 10 |
| 185 | 99.85 | radiation | 30.0 | 90 | < th | dose independent | rect. | 23 | 23 |
| 201 | 99.97 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 240 | 100.19 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 334 | 100.57 | wind | 1.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 348 | 100.62 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 349 | 100.62 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 15 |
| 374 | 100.72 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 387 | 100.78 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 5 | 11 |
| 410 | 100.83 | radiation | 10.0 | 270 | > th | dose independent | sin | 4 | NA |
| 419 | 100.86 | radiation | 40.0 | 90 | < th | dose dependent | no | NA | NA |
| 432 | 100.91 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 480 | 101.07 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 7 | 13 |
| 489 | 101.12 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 525 | 101.21 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 24 | 16 |
| 549 | 101.30 | humidity | 70.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 560 | 101.33 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 22 | 18 |
| 583 | 101.39 | radiation | 10.0 | 90 | < th | dose independent | sin | 23 | NA |
| 609 | 101.47 | humidity | 70.0 | 90 | > th | dose independent | rect. | 2 | 17 |
| 617 | 101.48 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 641 | 101.54 | radiation | 1.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 646 | 101.55 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 13 |
| 658 | 101.58 | radiation | 10.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 666 | 101.61 | humidity | 70.0 | 270 | > th | dose independent | rect. | 24 | 10 |
| 681 | 101.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 19 |
| 684 | 101.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 19 |
| 751 | 101.73 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 765 | 101.74 | radiation | 1.0 | 90 | > th | dose dependent | no | NA | NA |
| 854 | 101.77 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 855 | 101.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 857 | 101.77 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 860 | 101.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 861 | 101.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 898 | 101.85 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 909 | 101.87 | humidity | 70.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 975 | 102.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 5 |
| 976 | 102.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 5 |