Os07g0663900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0663900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 411.87 | 0.954 | 5.68 | 0.326 | 0.548 | -1.91 | -2.12 | -0.0214 | 0.0681 | 22.1 | 91.64 | 221 | -- | -- |
| 410.02 | 0.943 | 5.7 | 0.379 | 0.513 | -2 | -2.23 | -- | 0.0888 | 22 | 92.47 | 215 | -- | -- |
| 422.24 | 0.957 | 5.68 | 0.397 | 0.627 | -2.25 | -- | -0.434 | 0.124 | 20.8 | 93.69 | 138 | -- | -- |
| 421.42 | 0.956 | 5.68 | 0.347 | 0.686 | -2.32 | -- | -- | 0.135 | 20.7 | 93.81 | 116 | -- | -- |
| 441.3 | 0.978 | 5.64 | 0.428 | -- | -2.66 | -- | 0.164 | 0.135 | -- | 93.8 | 143 | -- | -- |
| 479.47 | 1.03 | 5.62 | 0.216 | 1.03 | -- | -1.1 | -- | 0.35 | 19.5 | -- | -- | -- | -- |
| 481.59 | 1.03 | 5.62 | 0.247 | 1.05 | -- | -- | -- | 0.352 | 18.9 | -- | -- | -- | -- |
| 441.05 | 0.978 | 5.65 | 0.396 | -- | -2.76 | -- | -- | 0.106 | -- | 93.68 | 177 | -- | -- |
| 424.1 | 0.959 | 5.67 | -- | 0.641 | -2.39 | -- | -- | 0.104 | 21.1 | 93.89 | 90 | -- | -- |
| 538.93 | 1.08 | 5.6 | 0.225 | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
| 483.19 | 1.03 | 5.63 | -- | 1.04 | -- | -- | -- | 0.324 | 19 | -- | -- | -- | -- |
| 445.23 | 0.983 | 5.66 | -- | -- | -2.74 | -- | -- | 0.0742 | -- | 93.8 | 168 | -- | -- |
| 540.27 | 1.08 | 5.61 | -- | -- | -- | -- | -- | 0.307 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 407.47 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 11 |
| 2 | 408.37 | humidity | 90 | 270 | > th | dose dependent | rect. | 23 | 6 |
| 5 | 410.00 | humidity | 90 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 7 | 410.13 | humidity | 90 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 13 | 410.92 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 17 | 411.16 | humidity | 90 | 270 | > th | dose dependent | sin | 10 | NA |
| 18 | 411.17 | temperature | 25 | 270 | < th | dose independent | sin | 10 | NA |
| 24 | 411.83 | humidity | 90 | 270 | > th | dose dependent | rect. | 22 | 21 |
| 63 | 414.52 | humidity | 90 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 68 | 415.00 | humidity | 90 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 79 | 415.30 | humidity | 90 | 270 | > th | dose dependent | rect. | 17 | 12 |
| 107 | 416.40 | humidity | 90 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 124 | 416.62 | humidity | 90 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 160 | 417.06 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 18 | 9 |
| 207 | 418.42 | humidity | 90 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 213 | 418.47 | humidity | 90 | 270 | > th | dose dependent | no | NA | NA |
| 262 | 419.19 | temperature | 25 | 720 | < th | dose independent | rect. | 21 | 7 |
| 263 | 419.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 2 |
| 266 | 419.40 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 18 |
| 289 | 419.95 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 10 |
| 301 | 420.15 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 10 |
| 340 | 420.72 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 484 | 422.48 | humidity | 90 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 560 | 423.64 | humidity | 90 | 30 | > th | dose dependent | rect. | 3 | 5 |
| 593 | 424.33 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 19 | 3 |
| 629 | 424.69 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 20 |
| 633 | 424.75 | humidity | 90 | 30 | > th | dose dependent | rect. | 3 | 18 |
| 639 | 424.85 | humidity | 90 | 30 | > th | dose dependent | rect. | 3 | 3 |
| 690 | 425.23 | temperature | 30 | 30 | < th | dose independent | rect. | 3 | 18 |
| 714 | 425.57 | humidity | 90 | 270 | > th | dose independent | sin | 8 | NA |
| 731 | 425.70 | atmosphere | 1005 | 720 | > th | dose independent | sin | 14 | NA |
| 744 | 425.94 | wind | 3 | 30 | < th | dose dependent | rect. | 3 | 9 |
| 750 | 426.02 | humidity | 90 | 30 | > th | dose dependent | rect. | 3 | 13 |
| 810 | 426.50 | wind | 7 | 10 | < th | dose dependent | rect. | 15 | 12 |
| 842 | 427.11 | wind | 7 | 30 | < th | dose dependent | rect. | 13 | 14 |
| 871 | 427.47 | temperature | 30 | 30 | < th | dose independent | rect. | 3 | 23 |
| 878 | 427.56 | wind | 5 | 10 | < th | dose dependent | rect. | 21 | 6 |
| 884 | 427.67 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 6 |
| 898 | 427.84 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 22 |
| 914 | 428.08 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 2 |
| 985 | 428.68 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 5 |