Os07g0663500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glucose/ribitol dehydrogenase family protein.
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Os07g0663500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glucose/ribitol dehydrogenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.85 | 0.628 | 4.36 | 1.02 | 0.292 | 0.804 | -0.0978 | 0.902 | 0.19 | 11.6 | 1015 | 4225 | -- | -- |
| 179.91 | 0.625 | 4.36 | 1.1 | 0.286 | 0.743 | -0.114 | -- | 0.216 | 11.7 | 1015 | 4205 | -- | -- |
| 178.88 | 0.623 | 4.36 | 1.01 | 0.293 | 0.808 | -- | 0.9 | 0.19 | 11.4 | 1015 | 4224 | -- | -- |
| 179.94 | 0.625 | 4.36 | 1.09 | 0.288 | 0.742 | -- | -- | 0.213 | 11.4 | 1015 | 4201 | -- | -- |
| 184.24 | 0.632 | 4.37 | 1.01 | -- | 0.817 | -- | 0.867 | 0.183 | -- | 1015 | 4187 | -- | -- |
| 195.97 | 0.656 | 4.38 | 1.1 | 0.289 | -- | -0.296 | -- | 0.124 | 12.5 | -- | -- | -- | -- |
| 196.22 | 0.656 | 4.38 | 1.09 | 0.293 | -- | -- | -- | 0.121 | 11.8 | -- | -- | -- | -- |
| 185.12 | 0.634 | 4.36 | 1.08 | -- | 0.757 | -- | -- | 0.209 | -- | 1015 | 4116 | -- | -- |
| 210.5 | 0.676 | 4.38 | -- | 0.272 | 0.79 | -- | -- | 0.0883 | 11.1 | 1014 | 3962 | -- | -- |
| 201.63 | 0.663 | 4.38 | 1.08 | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
| 227.26 | 0.705 | 4.4 | -- | 0.28 | -- | -- | -- | 0.000331 | 11.6 | -- | -- | -- | -- |
| 215.12 | 0.683 | 4.39 | -- | -- | 0.804 | -- | -- | 0.0865 | -- | 1014 | 3915 | -- | -- |
| 232.19 | 0.711 | 4.41 | -- | -- | -- | -- | -- | -0.00201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 175.66 | humidity | 60 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 2 | 176.33 | humidity | 60 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 3 | 176.77 | humidity | 60 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 7 | 176.83 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 10 |
| 11 | 176.85 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 14 | 176.87 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 15 | 176.88 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 30 | 177.10 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 35 | 177.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 36 | 177.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 37 | 177.62 | humidity | 60 | 14400 | < th | dose dependent | rect. | 7 | 5 |
| 52 | 177.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 53 | 177.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 54 | 177.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 57 | 177.93 | temperature | 10 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 73 | 178.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 75 | 178.26 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 20 | 16 |
| 76 | 178.26 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 79 | 178.31 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 8 |
| 82 | 178.32 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 85 | 178.33 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 93 | 178.37 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 95 | 178.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 98 | 178.38 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 107 | 178.40 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 14 |
| 113 | 178.43 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 126 | 178.46 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 133 | 178.50 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 7 | NA |
| 139 | 178.51 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 7 | NA |
| 182 | 178.59 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 22 | 13 |
| 187 | 178.60 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 279 | 178.70 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 3 | 8 |
| 284 | 178.71 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 3 | 9 |
| 312 | 178.74 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 3 | 6 |
| 334 | 178.76 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 2 |
| 382 | 178.79 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 7 | NA |
| 383 | 178.79 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 395 | 178.80 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 10 | 9 |
| 474 | 178.87 | humidity | 60 | 14400 | < th | dose dependent | sin | 9 | NA |
| 498 | 178.89 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 500 | 178.89 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 503 | 178.90 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 510 | 178.90 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 514 | 178.91 | atmosphere | 1015 | 4320 | > th | dose independent | no | NA | NA |
| 515 | 178.91 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 520 | 178.91 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 525 | 178.92 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 527 | 178.92 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 543 | 178.93 | atmosphere | 1015 | 4320 | < th | dose independent | no | NA | NA |
| 550 | 178.93 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 566 | 178.94 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 595 | 178.97 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 621 | 178.98 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 9 | 23 |
| 626 | 178.99 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 657 | 179.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 701 | 179.03 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 800 | 179.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 816 | 179.09 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 18 | NA |
| 943 | 179.18 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 21 |