Os07g0663000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0663000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.1 | 0.713 | 8.34 | -1.87 | 2.36 | 1.11 | -0.282 | 6.4 | -0.603 | 13 | 9.827 | 3991 | 16.9 | 13.9 |
| 315.83 | 0.828 | 8.09 | -1.96 | 2.18 | 0.864 | -0.0961 | -- | -0.322 | 12.9 | 11.22 | 2081 | 17.8 | 15 |
| 230.3 | 0.707 | 8.34 | -1.84 | 2.34 | 1.16 | -- | 6.47 | -0.605 | 13 | 9.794 | 3990 | 16.9 | 13.9 |
| 300.81 | 0.808 | 8.13 | -1.35 | 2.21 | 1.1 | -- | -- | -0.597 | 12.9 | -0.08739 | 11710 | 15.7 | 15 |
| 572.31 | 1.11 | 8.36 | -2.03 | -- | 1.14 | -- | 6.16 | -0.587 | -- | 10.85 | 4083 | 16.9 | 13.9 |
| 329.6 | 0.851 | 8.11 | -1.91 | 2.27 | -- | -0.392 | -- | -0.427 | 12.9 | -- | -- | -- | -- |
| 330.24 | 0.851 | 8.11 | -1.93 | 2.27 | -- | -- | -- | -0.429 | 12.9 | -- | -- | -- | -- |
| 363.94 | 0.889 | 8.05 | -1.72 | -- | 3.04 | -- | -- | 0.0248 | -- | -23.03 | 2278 | 1.48 | 6.87 |
| 300.38 | 0.807 | 7.99 | -- | 2.33 | 2.24 | -- | -- | -0.379 | 12.4 | -2.217e-07 | 15298 | 17.5 | 11.6 |
| 651.36 | 1.19 | 8.15 | -2.01 | -- | -- | -- | -- | -0.472 | -- | -- | -- | -- | -- |
| 428.04 | 0.968 | 8.07 | -- | 2.3 | -- | -- | -- | -0.214 | 13 | -- | -- | -- | -- |
| 420.34 | 0.955 | 8.13 | -- | -- | 2.79 | -- | -- | -0.367 | -- | -28 | 2184 | 3.62 | 4.05 |
| 757.99 | 1.29 | 8.1 | -- | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.63 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 2 | 236.85 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 15 | 243.96 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 16 | 245.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 17 | 246.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 18 | 246.97 | radiation | 10 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 23 | 247.03 | radiation | 10 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 31 | 247.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 32 | 248.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 19 |
| 33 | 248.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 39 | 248.98 | radiation | 10 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 97 | 253.57 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 101 | 253.73 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 102 | 253.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 105 | 253.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 109 | 253.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 3 |
| 111 | 253.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 120 | 254.14 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 143 | 254.57 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 161 | 254.58 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 253 | 256.02 | radiation | 40 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 260 | 256.08 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 274 | 256.11 | radiation | 40 | 4320 | < th | dose dependent | rect. | 2 | 5 |
| 328 | 256.64 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 12 |
| 335 | 256.72 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 21 |
| 341 | 256.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 11 |
| 342 | 256.79 | radiation | 40 | 4320 | < th | dose dependent | rect. | 22 | 9 |
| 380 | 257.15 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 385 | 257.17 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 419 | 257.61 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 426 | 257.67 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 430 | 257.71 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 453 | 257.89 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 462 | 257.93 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 547 | 258.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 564 | 258.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 601 | 258.83 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 716 | 259.14 | temperature | 10 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 820 | 259.48 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 830 | 259.51 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 834 | 259.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 21 |
| 837 | 259.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 849 | 259.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 915 | 259.70 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |