Os07g0662900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 4-alpha-glucanotransferase (EC 2.4.1.25).
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Os07g0662900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 4-alpha-glucanotransferase (EC 2.4.1.25).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.42 | 0.403 | 13.3 | -1.4 | 1.51 | -0.54 | -0.889 | -0.186 | -0.616 | 16.1 | 73 | 1261 | -- | -- |
| 73.44 | 0.399 | 13.4 | -1.43 | 1.52 | -0.555 | -0.919 | -- | -0.623 | 16 | 72.94 | 1242 | -- | -- |
| 75.6 | 0.405 | 13.3 | -1.37 | 1.51 | -0.539 | -- | -0.352 | -0.614 | 16 | 73 | 1245 | -- | -- |
| 75.85 | 0.406 | 13.4 | -1.44 | 1.51 | -0.565 | -- | -- | -0.63 | 16 | 72.9 | 1245 | -- | -- |
| 125.98 | 0.526 | 13.3 | -1.49 | -- | -0.806 | -- | 0.523 | -0.613 | -- | 76 | 1869 | -- | -- |
| 83.96 | 0.43 | 13.3 | -1.32 | 1.43 | -- | -0.997 | -- | -0.552 | 16.2 | -- | -- | -- | -- |
| 86.72 | 0.436 | 13.3 | -1.33 | 1.43 | -- | -- | -- | -0.557 | 16.2 | -- | -- | -- | -- |
| 127.64 | 0.528 | 13.3 | -1.47 | -- | -0.804 | -- | -- | -0.606 | -- | 76 | 1869 | -- | -- |
| 116.4 | 0.502 | 13.4 | -- | 1.38 | -0.839 | -- | -- | -0.584 | 16.1 | 72 | 29318 | -- | -- |
| 196.55 | 0.655 | 13.3 | -1.39 | -- | -- | -- | -- | -0.595 | -- | -- | -- | -- | -- |
| 133.29 | 0.54 | 13.3 | -- | 1.45 | -- | -- | -- | -0.409 | 16.2 | -- | -- | -- | -- |
| 184.1 | 0.634 | 13.3 | -- | -- | -0.763 | -- | -- | -0.429 | -- | 76.34 | 1870 | -- | -- |
| 247.24 | 0.734 | 13.3 | -- | -- | -- | -- | -- | -0.441 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.05 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 2 | 69.20 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 13 | 70.08 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 26 | 70.88 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 35 | 71.04 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 47 | 71.23 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 60 | 71.41 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 10 |
| 77 | 71.68 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 84 | 71.75 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 102 | 71.96 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 158 | 72.33 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 217 | 72.73 | humidity | 80.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 252 | 72.94 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 253 | 72.94 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 9 | 8 |
| 283 | 73.05 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 301 | 73.11 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 323 | 73.18 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 327 | 73.19 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 4 | NA |
| 395 | 73.41 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 403 | 73.43 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 15 | 5 |
| 471 | 73.59 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 498 | 73.64 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 12 | NA |
| 504 | 73.66 | humidity | 50.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 528 | 73.71 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 533 | 73.73 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 560 | 73.77 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 588 | 73.84 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 589 | 73.84 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 612 | 73.88 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 645 | 73.95 | humidity | 80.0 | 30 | < th | dose independent | rect. | 7 | 12 |
| 672 | 74.00 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 691 | 74.02 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 692 | 74.02 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 742 | 74.08 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 822 | 74.19 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 824 | 74.19 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 852 | 74.22 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 19 |