Os07g0662700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0662700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.56 | 0.494 | 6.27 | 0.207 | 1.66 | 1.18 | 0.735 | -2.21 | -0.379 | 19.2 | 24.7 | 109 | -- | -- |
| 112.42 | 0.494 | 6.23 | 0.489 | 1.67 | 0.983 | 0.559 | -- | -0.285 | 19.1 | 25.02 | 123 | -- | -- |
| 111.93 | 0.493 | 6.26 | 0.234 | 1.67 | 1.16 | -- | -1.88 | -0.364 | 19.2 | 24.72 | 109 | -- | -- |
| 112.64 | 0.494 | 6.23 | 0.505 | 1.63 | 0.958 | -- | -- | -0.284 | 18.9 | 25.7 | 273 | -- | -- |
| 192.05 | 0.645 | 6.24 | 0.134 | -- | 2.14 | -- | -1.05 | -0.471 | -- | 24.4 | 399 | -- | -- |
| 127.68 | 0.53 | 6.22 | 0.646 | 1.98 | -- | 0.721 | -- | -0.211 | 18.5 | -- | -- | -- | -- |
| 128.96 | 0.532 | 6.22 | 0.636 | 1.98 | -- | -- | -- | -0.209 | 18.5 | -- | -- | -- | -- |
| 193.87 | 0.648 | 6.22 | 0.224 | -- | 2.19 | -- | -- | -0.437 | -- | 24.6 | 405 | -- | -- |
| 118.36 | 0.507 | 6.23 | -- | 1.54 | 1.08 | -- | -- | -0.311 | 18.9 | 25.6 | 284 | -- | -- |
| 332.64 | 0.852 | 6.18 | 0.587 | -- | -- | -- | -- | -0.25 | -- | -- | -- | -- | -- |
| 139.63 | 0.553 | 6.23 | -- | 1.97 | -- | -- | -- | -0.28 | 18.5 | -- | -- | -- | -- |
| 195.16 | 0.651 | 6.23 | -- | -- | 2.22 | -- | -- | -0.465 | -- | 24.6 | 406 | -- | -- |
| 341.71 | 0.863 | 6.19 | -- | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 11 |
| 20 | 104.81 | temperature | 15 | 270 | > th | dose dependent | sin | 0 | NA |
| 22 | 104.82 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 37 | 105.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 42 | 105.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 5 |
| 54 | 105.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 96 | 106.34 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 243 | 107.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 10 |
| 303 | 108.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 308 | 108.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 353 | 108.67 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 375 | 108.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 379 | 108.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 11 |
| 388 | 108.91 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 478 | 109.41 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 581 | 109.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 696 | 110.15 | temperature | 10 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 822 | 110.46 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 921 | 110.74 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 934 | 110.76 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 937 | 110.76 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 979 | 110.87 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 6 |
| 980 | 110.87 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 12 |