FiT-DB / Search/ Help/ Sample detail

Os07g0662500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Elongation factor 1-beta' (EF-1-beta').


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.2 (0.0215) R2 : 0.000558
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0229 (0.0454) R2dN8 : 0.000721 R2N8 : 0.000558
σ : 0.406
deviance : 75.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.54 0.292 14.2 0.609 0.701 -0.485 0.606 -0.0566 0.0342 19.7 39.49 71 -- --
38.54 0.289 14.2 0.61 0.701 -0.479 0.598 -- 0.0346 19.7 39.49 70 -- --
39.46 0.293 14.2 0.597 0.702 -0.452 -- 0.156 0.0398 19.5 39.49 70 -- --
39.49 0.293 14.2 0.595 0.703 -0.46 -- -- 0.0363 19.5 39.49 70 -- --
54.65 0.344 14.2 0.447 -- -0.536 -- 0.0136 -0.0485 -- 40.07 812 -- --
42.85 0.307 14.2 0.576 0.676 -- 0.454 -- 0.0501 18.9 -- -- -- --
43.32 0.308 14.2 0.569 0.68 -- -- -- 0.0519 18.7 -- -- -- --
54.53 0.344 14.2 0.574 -- -0.51 -- -- -0.0562 -- 37.82 799 -- --
48.37 0.326 14.2 -- 0.691 -0.331 -- -- -0.00664 19.3 40.02 66 -- --
67.46 0.384 14.2 0.553 -- -- -- -- 0.0385 -- -- -- -- --
51.85 0.337 14.2 -- 0.673 -- -- -- -0.0115 18.8 -- -- -- --
56.24 0.349 14.3 -- -- -0.806 -- -- -0.228 -- 10.01 774 -- --
75.53 0.406 14.2 -- -- -- -- -- -0.0229 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.37 wind 5.0 90 < th dose independent rect. 3 6
2 34.66 wind 9.0 90 < th dose dependent rect. 3 6
4 34.78 temperature 30.0 90 < th dose independent rect. 3 6
5 34.81 wind 9.0 90 < th dose independent rect. 9 18
6 34.82 precipitation 0.1 90 < th dose independent rect. 3 6
7 34.82 precipitation 0.1 90 < th dose dependent rect. 3 6
8 34.84 radiation 40.0 90 < th dose independent rect. 3 16
9 34.85 wind 5.0 270 < th dose independent rect. 1 6
14 34.95 radiation 30.0 90 < th dose independent rect. 3 6
15 34.96 humidity 60.0 90 > th dose independent rect. 3 6
19 35.01 temperature 10.0 90 > th dose independent rect. 3 6
22 35.01 atmosphere 995.0 90 > th dose independent rect. 3 6
23 35.01 atmosphere 1015.0 90 < th dose independent rect. 3 6
24 35.01 temperature 10.0 90 > th dose independent rect. 9 18
25 35.01 atmosphere 1000.0 10 > th dose dependent rect. 3 6
26 35.02 radiation 40.0 10 < th dose independent rect. 4 16
27 35.10 precipitation 0.1 90 < th dose independent rect. 9 18
28 35.10 precipitation 0.1 90 < th dose dependent rect. 9 18
30 35.16 precipitation 0.1 10 < th dose independent rect. 3 6
31 35.16 precipitation 0.1 10 < th dose dependent rect. 3 6
33 35.22 precipitation 0.1 270 < th dose independent rect. 14 16
34 35.22 precipitation 0.1 270 < th dose dependent rect. 14 16
36 35.26 radiation 20.0 270 < th dose independent rect. 1 7
39 35.28 wind 9.0 270 < th dose independent rect. 6 8
43 35.31 precipitation 0.1 10 < th dose independent rect. 9 18
44 35.31 precipitation 0.1 10 < th dose dependent rect. 9 18
52 35.36 precipitation 0.1 270 < th dose independent rect. 1 7
53 35.36 precipitation 0.1 270 < th dose dependent rect. 1 7
58 35.40 wind 5.0 270 < th dose independent rect. 3 2
65 35.42 humidity 50.0 270 > th dose independent rect. 6 8
66 35.42 precipitation 0.1 270 < th dose independent rect. 6 8
69 35.42 precipitation 0.1 270 < th dose dependent rect. 6 8
77 35.46 temperature 10.0 270 > th dose independent rect. 6 8
78 35.46 atmosphere 995.0 270 > th dose independent rect. 6 8
79 35.46 atmosphere 1015.0 270 < th dose independent rect. 6 8
80 35.46 temperature 10.0 270 > th dose independent rect. 14 16
82 35.47 atmosphere 995.0 90 > th dose independent rect. 9 18
84 35.48 temperature 10.0 10 > th dose dependent rect. 9 18
86 35.49 temperature 10.0 10 > th dose independent rect. 3 6
88 35.49 temperature 30.0 10 < th dose independent rect. 3 6
89 35.49 humidity 50.0 10 > th dose independent rect. 3 6
91 35.49 atmosphere 995.0 10 > th dose independent rect. 3 6
92 35.49 atmosphere 1015.0 10 < th dose independent rect. 3 6
94 35.49 temperature 10.0 10 > th dose independent rect. 9 18
109 35.53 radiation 40.0 270 < th dose dependent rect. 1 7
111 35.54 radiation 30.0 90 < th dose independent rect. 3 8
112 35.54 precipitation 0.1 270 < th dose independent rect. 2 15
113 35.54 wind 9.0 270 < th dose dependent rect. 1 6
114 35.54 precipitation 0.1 270 < th dose dependent rect. 2 15
121 35.60 temperature 10.0 270 > th dose independent rect. 1 7
123 35.60 temperature 30.0 270 < th dose independent rect. 1 7
124 35.60 humidity 50.0 270 > th dose independent rect. 1 7
126 35.60 atmosphere 995.0 270 > th dose independent rect. 1 7
127 35.60 atmosphere 1015.0 270 < th dose independent rect. 1 7
142 35.63 wind 9.0 270 < th dose independent rect. 14 16
144 35.64 wind 9.0 10 < th dose independent rect. 9 6
158 35.65 atmosphere 995.0 270 > th dose independent rect. 14 16
160 35.65 precipitation 0.1 10 < th dose independent rect. 15 18
163 35.65 precipitation 0.1 10 < th dose dependent rect. 15 18
167 35.66 radiation 1.0 10 > th dose independent rect. 9 6
176 35.69 temperature 10.0 10 > th dose independent rect. 9 6
178 35.69 atmosphere 995.0 10 > th dose independent rect. 9 6
179 35.69 atmosphere 1015.0 10 < th dose independent rect. 9 6
180 35.69 precipitation 0.1 10 < th dose independent rect. 9 6
183 35.69 temperature 10.0 10 > th dose independent rect. 15 18
184 35.69 precipitation 0.1 10 < th dose dependent rect. 9 6
192 35.71 radiation 40.0 270 < th dose independent rect. 14 16
195 35.71 atmosphere 1000.0 270 > th dose dependent rect. 1 6
209 35.74 temperature 10.0 10 > th dose dependent rect. 3 6
214 35.75 wind 9.0 270 < th dose dependent rect. 7 7
227 35.77 precipitation 0.1 270 < th dose independent rect. 3 2
237 35.77 precipitation 0.1 270 < th dose dependent rect. 3 2
239 35.78 humidity 50.0 270 > th dose independent rect. 7 18
245 35.79 atmosphere 995.0 10 > th dose independent rect. 9 18
246 35.80 radiation 1.0 270 > th dose independent rect. 6 8
247 35.80 radiation 10.0 270 < th dose independent rect. 17 9
251 35.80 atmosphere 995.0 10 > th dose independent rect. 15 18
253 35.81 wind 1.0 30 > th dose independent rect. 9 6
254 35.81 temperature 10.0 1440 > th dose independent rect. 10 6
259 35.81 temperature 10.0 1440 > th dose independent rect. 16 18
265 35.82 wind 7.0 270 < th dose independent rect. 17 9
274 35.83 radiation 30.0 270 < th dose dependent rect. 17 9
289 35.84 wind 9.0 10 < th dose independent rect. 15 18
329 35.88 wind 1.0 270 > th dose independent rect. 1 7
331 35.88 humidity 50.0 270 > th dose independent rect. 17 9
332 35.88 wind 1.0 270 > th dose independent rect. 14 16
343 35.89 temperature 10.0 270 > th dose independent rect. 17 9
347 35.89 temperature 10.0 270 > th dose independent rect. 2 15
348 35.89 atmosphere 1015.0 270 < th dose independent rect. 2 15
358 35.91 wind 7.0 90 < th dose independent rect. 19 8
392 35.95 wind 9.0 270 < th dose independent rect. 5 22
397 35.96 temperature 10.0 10 > th dose dependent rect. 9 6
427 36.00 wind 9.0 270 < th dose dependent rect. 3 2
442 36.02 temperature 10.0 90 > th dose independent rect. 19 8
443 36.02 temperature 30.0 90 < th dose independent rect. 19 8
444 36.02 humidity 50.0 90 > th dose independent rect. 19 8
446 36.02 atmosphere 995.0 90 > th dose independent rect. 19 8
447 36.02 radiation 1.0 90 < th dose independent rect. 19 8
461 36.02 radiation 1.0 90 < th dose dependent rect. 19 8
481 36.03 atmosphere 1015.0 90 < th dose independent rect. 9 18
484 36.03 temperature 10.0 90 > th dose dependent rect. 19 8
493 36.04 precipitation 0.1 90 < th dose independent rect. 19 8
500 36.04 precipitation 0.1 90 < th dose dependent rect. 19 8
516 36.05 radiation 40.0 90 < th dose dependent rect. 3 6
523 36.06 humidity 50.0 90 > th dose dependent rect. 3 6
527 36.07 atmosphere 1005.0 10 > th dose independent rect. 3 6
531 36.08 humidity 90.0 10 < th dose independent rect. 9 6
536 36.08 precipitation 0.1 270 < th dose independent rect. 10 23
539 36.08 precipitation 0.1 270 < th dose dependent rect. 10 23
550 36.09 atmosphere 995.0 270 > th dose independent rect. 2 15
558 36.10 temperature 10.0 270 > th dose independent rect. 3 2
560 36.10 temperature 30.0 270 < th dose independent rect. 3 2
561 36.10 humidity 50.0 270 > th dose independent rect. 3 2
564 36.10 atmosphere 995.0 270 > th dose independent rect. 3 2
565 36.10 atmosphere 1010.0 270 < th dose independent rect. 3 2
567 36.10 radiation 20.0 270 < th dose independent rect. 3 2
570 36.10 precipitation 0.1 270 < th dose independent rect. 17 9
572 36.10 temperature 10.0 270 > th dose independent rect. 5 22
574 36.10 precipitation 0.1 270 < th dose dependent rect. 17 9
594 36.12 radiation 30.0 270 < th dose dependent rect. 3 2
611 36.14 temperature 10.0 1440 > th dose independent rect. 4 6
615 36.14 atmosphere 995.0 1440 > th dose independent rect. 4 6
617 36.14 atmosphere 1015.0 1440 < th dose independent rect. 4 6
620 36.14 temperature 10.0 1440 > th dose independent rect. 10 18
650 36.15 radiation 1.0 270 < th dose dependent rect. 3 2
655 36.16 radiation 1.0 270 < th dose independent rect. 3 2
698 36.19 humidity 50.0 10 > th dose independent rect. 15 18
700 36.19 temperature 10.0 10 > th dose dependent rect. 20 8
713 36.21 wind 9.0 270 < th dose independent rect. 2 15
719 36.22 radiation 1.0 270 > th dose independent rect. 9 1
727 36.22 atmosphere 1015.0 10 < th dose independent rect. 15 18
737 36.23 atmosphere 1015.0 10 < th dose independent rect. 9 18
759 36.24 precipitation 0.1 10 < th dose independent rect. 4 16
763 36.24 precipitation 0.1 10 < th dose dependent rect. 4 16
777 36.26 humidity 50.0 270 > th dose independent rect. 9 1
782 36.26 humidity 50.0 270 > th dose dependent rect. 1 6
787 36.27 precipitation 0.1 270 < th dose independent rect. 9 1
790 36.27 wind 9.0 10 < th dose independent rect. 20 8
796 36.27 precipitation 0.1 270 < th dose dependent rect. 9 1
801 36.27 radiation 40.0 270 < th dose dependent rect. 1 12
809 36.28 temperature 10.0 10 > th dose independent rect. 20 8
810 36.28 temperature 30.0 10 < th dose independent rect. 20 8
811 36.28 humidity 50.0 10 > th dose independent rect. 20 8
814 36.28 atmosphere 995.0 10 > th dose independent rect. 20 8
815 36.28 radiation 1.0 10 < th dose independent rect. 20 8
820 36.28 temperature 10.0 10 > th dose independent rect. 4 16
822 36.28 atmosphere 1015.0 10 < th dose independent rect. 4 16
830 36.28 radiation 1.0 10 < th dose dependent rect. 20 8
836 36.29 wind 9.0 270 < th dose independent rect. 9 1
837 36.29 temperature 15.0 270 > th dose independent rect. 9 1
848 36.30 atmosphere 995.0 270 > th dose independent rect. 9 1
849 36.30 atmosphere 1015.0 270 < th dose independent rect. 9 1
857 36.30 temperature 10.0 270 > th dose independent rect. 10 23
861 36.31 wind 1.0 270 > th dose independent rect. 3 1
889 36.33 humidity 50.0 90 > th dose dependent rect. 19 8
907 36.34 humidity 50.0 270 > th dose dependent rect. 3 2
908 36.34 atmosphere 1000.0 270 > th dose dependent rect. 3 2