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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0661700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0288) R2 : 0.0163
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.167 (0.0607) R2dN8 : 0.021 R2N8 : 0.0163
σ : 0.543
deviance : 135.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.56 0.522 2.95 0.0775 0.228 -0.426 0.351 -1.37 0.229 1.61 1.501 4330 -- --
125.47 0.522 2.94 0.357 0.233 -0.37 0.281 -- 0.241 1.63 1.54 7179 -- --
123.98 0.519 2.95 0.0704 0.227 -0.428 -- -1.39 0.224 1.55 1.501 4353 -- --
125.82 0.522 2.94 0.401 0.246 -0.387 -- -- 0.28 1.7 1.56 7188 -- --
123.77 0.518 2.93 0.206 -- -0.554 -- -1.37 0.25 -- 1.501 4621 -- --
129.6 0.534 2.94 0.325 0.21 -- 0.331 -- 0.2 1.4 -- -- -- --
130.04 0.534 2.94 0.314 0.21 -- -- -- 0.198 1.53 -- -- -- --
126.88 0.525 2.93 0.533 -- -0.508 -- -- 0.334 -- 1.55 16182 -- --
129.25 0.53 2.93 -- 0.204 -0.363 -- -- 0.256 1.56 7.14 8771 -- --
132.75 0.538 2.94 0.322 -- -- -- -- 0.203 -- -- -- -- --
132.64 0.539 2.95 -- 0.216 -- -- -- 0.163 1.58 -- -- -- --
131.01 0.533 2.93 -- -- -0.458 -- -- 0.255 -- 7.298 9037 -- --
135.48 0.543 2.95 -- -- -- -- -- 0.167 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.99 temperature 25.0 30 < th dose independent rect. 2 1
2 115.01 humidity 80.0 30 > th dose independent rect. 2 1
3 115.07 wind 9.0 30 < th dose dependent rect. 2 1
4 115.08 wind 5.0 30 < th dose independent rect. 2 1
7 115.08 humidity 50.0 30 > th dose dependent rect. 2 1
10 115.09 temperature 10.0 30 > th dose independent rect. 2 1
13 115.09 humidity 50.0 30 > th dose independent rect. 2 1
16 115.09 atmosphere 995.0 30 > th dose independent rect. 2 1
17 115.09 atmosphere 1010.0 30 < th dose independent rect. 2 1
19 115.09 radiation 1.0 30 < th dose independent rect. 2 1
24 115.09 precipitation 0.1 30 < th dose independent rect. 2 1
25 115.09 temperature 10.0 30 > th dose independent rect. 3 23
27 115.09 radiation 1.0 30 < th dose dependent rect. 2 1
32 115.09 precipitation 0.1 30 < th dose dependent rect. 2 1
34 115.11 temperature 10.0 30 > th dose dependent rect. 2 1
35 115.14 atmosphere 1015.0 30 < th dose dependent rect. 2 1
38 115.18 wind 1.0 30 < th dose independent rect. 2 1
40 115.18 atmosphere 995.0 30 > th dose dependent rect. 2 1
49 115.41 temperature 30.0 30 < th dose dependent rect. 2 1
54 116.03 radiation 1.0 43200 < th dose dependent rect. 3 1
64 116.34 wind 1.0 30 > th dose independent rect. 2 1
101 117.71 wind 9.0 30 < th dose independent rect. 3 23
107 118.55 wind 9.0 1440 < th dose independent rect. 3 1
108 118.55 temperature 10.0 1440 > th dose independent rect. 3 1
111 118.55 temperature 30.0 1440 < th dose independent rect. 3 1
115 118.55 humidity 50.0 1440 > th dose independent rect. 3 1
124 118.55 atmosphere 995.0 1440 > th dose independent rect. 3 1
125 118.55 radiation 1.0 1440 < th dose independent rect. 3 1
145 118.55 temperature 10.0 1440 > th dose independent rect. 4 23
148 118.55 radiation 1.0 1440 < th dose dependent rect. 3 1
165 120.07 atmosphere 995.0 30 > th dose independent rect. 3 23
170 120.50 wind 1.0 10 < th dose dependent rect. 8 2
172 120.54 wind 1.0 10 < th dose independent rect. 8 2
175 120.93 wind 1.0 43200 < th dose independent rect. 1 2
176 121.02 humidity 90.0 1440 > th dose dependent rect. 6 2
181 121.37 humidity 90.0 1440 > th dose independent rect. 6 2
182 121.41 humidity 90.0 1440 < th dose independent rect. 6 2
184 121.63 precipitation 0.1 1440 < th dose independent rect. 5 2
185 121.63 precipitation 0.1 1440 < th dose dependent rect. 5 2
186 121.66 humidity 60.0 1440 > th dose independent rect. 4 5
189 121.76 temperature 25.0 14400 < th dose independent rect. 7 1
190 121.79 temperature 25.0 14400 > th dose independent rect. 7 1
191 121.85 wind 3.0 43200 < th dose dependent rect. 1 3
193 121.86 temperature 25.0 14400 < th dose independent rect. 17 4
194 121.88 humidity 70.0 14400 > th dose independent rect. 18 1
196 121.89 temperature 25.0 14400 > th dose independent rect. 17 1
197 121.89 temperature 25.0 14400 < th dose independent rect. 17 1
200 121.91 temperature 25.0 14400 > th dose independent rect. 17 3
203 121.96 temperature 25.0 14400 < th dose independent rect. 19 2
204 121.98 wind 1.0 43200 > th dose independent rect. 1 1
205 121.98 humidity 80.0 14400 > th dose independent rect. 13 8
206 121.98 precipitation 0.1 4320 < th dose independent rect. 9 8
207 121.98 humidity 60.0 1440 > th dose independent rect. 24 9
208 121.98 precipitation 0.1 4320 < th dose dependent rect. 9 8
211 122.00 precipitation 0.1 4320 > th dose independent rect. 9 8
215 122.02 humidity 80.0 14400 < th dose independent rect. 14 6
220 122.03 wind 3.0 43200 < th dose independent rect. 24 9
222 122.04 temperature 25.0 14400 > th dose independent rect. 19 1
232 122.06 wind 3.0 43200 > th dose independent rect. 24 9
234 122.06 humidity 80.0 14400 > th dose dependent rect. 20 2
237 122.08 precipitation 0.1 1440 > th dose independent rect. 5 2
239 122.08 wind 3.0 43200 > th dose independent rect. 2 7
246 122.10 wind 1.0 43200 < th dose independent rect. 5 1
250 122.11 wind 3.0 43200 > th dose independent rect. 7 2
255 122.11 humidity 70.0 14400 > th dose dependent rect. 14 8
259 122.12 wind 3.0 43200 < th dose independent rect. 24 5
262 122.12 wind 3.0 43200 < th dose independent rect. 2 7
265 122.12 precipitation 0.1 1440 > th dose dependent rect. 5 2
277 122.13 humidity 70.0 14400 > th dose dependent rect. 14 6
281 122.14 humidity 70.0 14400 > th dose independent rect. 18 14
302 122.17 precipitation 0.1 4320 < th dose independent rect. 5 12
305 122.17 precipitation 0.1 4320 < th dose dependent rect. 5 12
307 122.18 temperature 30.0 14400 < th dose dependent rect. 17 2
313 122.19 humidity 80.0 14400 < th dose independent rect. 15 3
316 122.19 precipitation 0.1 4320 > th dose independent rect. 5 12
322 122.20 wind 1.0 4320 > th dose independent rect. 16 4
326 122.20 temperature 10.0 14400 > th dose dependent rect. 17 1
348 122.22 wind 1.0 1440 < th dose independent rect. 14 5
352 122.22 temperature 20.0 14400 > th dose dependent rect. 17 1
368 122.23 precipitation 0.1 4320 > th dose dependent rect. 9 8
371 122.23 precipitation 0.1 4320 > th dose dependent rect. 5 11
388 122.25 humidity 70.0 14400 < th dose independent rect. 18 1
419 122.27 temperature 25.0 14400 > th dose independent rect. 4 4
447 122.28 temperature 25.0 14400 > th dose independent rect. 17 15
461 122.28 humidity 90.0 14400 < th dose dependent rect. 16 6
471 122.29 temperature 25.0 14400 < th dose independent rect. 4 4
479 122.29 humidity 70.0 14400 > th dose independent rect. 18 11
495 122.30 wind 3.0 43200 < th dose independent rect. 7 2
496 122.30 wind 1.0 1440 < th dose independent rect. 16 3
506 122.30 humidity 60.0 14400 > th dose dependent rect. 15 1
523 122.31 humidity 90.0 14400 < th dose dependent rect. 18 1
544 122.32 temperature 25.0 14400 > th dose independent rect. 17 12
545 122.32 temperature 25.0 14400 < th dose independent rect. 17 15
546 122.32 wind 3.0 4320 < th dose dependent rect. 17 2
592 122.34 humidity 80.0 14400 > th dose dependent sin 17 NA
629 122.36 wind 1.0 1440 > th dose independent rect. 14 5
655 122.37 humidity 60.0 1440 > th dose independent rect. 22 11
680 122.38 temperature 25.0 14400 < th dose independent rect. 17 12
682 122.38 precipitation 0.1 14400 > th dose dependent rect. 17 1
697 122.39 humidity 90.0 14400 < th dose independent rect. 21 2
725 122.40 radiation 10.0 4320 < th dose independent rect. 9 1
730 122.40 wind 3.0 43200 > th dose independent rect. 24 5
781 122.42 temperature 25.0 14400 > th dose independent sin 15 NA
820 122.43 temperature 25.0 14400 < th dose independent sin 15 NA
937 122.45 radiation 20.0 43200 < th dose dependent rect. 23 1
959 122.46 humidity 60.0 1440 < th dose independent rect. 8 1