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Os07g0660400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pseudouridine synthase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0257) R2 : 0.858
β1 : 1.91 (0.0942) R2dD : 0.134 R2D : 0.0979
β2 : 3.89 (0.0795) R2dC : 1.1 R2C : 0.384
β3 : 3.3 (0.118) R2dE : 0.361 R2E : -0.354
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0819 (0.0556) R2dN8 : 0.000937 R2N8 : -0.0101
σ : 0.479
deviance : 105.7
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C
peak time of C : 16.4
E
wheather : temperature
threshold : 32.77
memory length : 249
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.8
open length of G : 8.15

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.94 0.484 10.4 1.91 3.8 3.25 0.126 0.208 0.088 16.5 31.43 241 19 8.05
105.75 0.479 10.4 1.92 3.87 3.28 0.0364 -- 0.0842 16.4 32.49 244 18.9 8.1
105.76 0.479 10.4 1.91 3.85 3.25 -- 0.144 0.0717 16.4 32.35 244 18.9 8.07
105.7 0.479 10.4 1.91 3.89 3.3 -- -- 0.0819 16.4 32.77 249 18.8 8.15
597.53 1.14 10.4 1.69 -- 1.47 -- -0.0825 -0.194 -- 32.35 244 18.9 8.07
174.77 0.62 10.5 1.66 3.07 -- 0.132 -- -0.202 18.1 -- -- -- --
174.81 0.619 10.5 1.65 3.07 -- -- -- -0.202 18.1 -- -- -- --
587.78 1.13 10.4 1.65 -- 1.36 -- -- -0.187 -- 37.86 2990 18.3 7.91
200.74 0.66 10.5 -- 3.76 2.94 -- -- -0.0471 16.5 33.79 229 19.2 8.03
662.72 1.2 10.4 1.57 -- -- -- -- -0.27 -- -- -- -- --
246.9 0.735 10.5 -- 3.04 -- -- -- -0.386 18.1 -- -- -- --
231.92 0.709 10.6 -- -- 3.44 -- -- -0.382 -- 355.4 3808 6.88 7.68
727.48 1.26 10.5 -- -- -- -- -- -0.444 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.58 temperature 30 270 < th dose dependent rect. 19 8
6 112.09 temperature 20 90 > th dose independent rect. 15 17
21 114.76 temperature 10 270 > th dose dependent rect. 16 15
23 114.98 temperature 30 10 < th dose dependent rect. 22 6
78 118.47 temperature 15 10 > th dose dependent sin 11 NA
82 118.67 temperature 30 10 < th dose dependent sin 11 NA
105 119.95 temperature 30 270 < th dose dependent rect. 23 1
119 120.33 temperature 15 10 > th dose dependent rect. 16 16
127 120.68 temperature 15 720 > th dose dependent rect. 19 4
139 121.01 temperature 15 720 > th dose dependent rect. 18 6
154 121.39 temperature 25 270 < th dose dependent rect. 11 16
275 123.37 temperature 25 10 < th dose dependent rect. 12 16
441 125.42 temperature 20 270 > th dose independent rect. 12 10
584 127.14 temperature 25 10 < th dose dependent rect. 10 18
729 128.78 temperature 15 270 > th dose dependent rect. 3 3
761 129.26 temperature 15 270 > th dose dependent rect. 1 6
780 129.37 temperature 15 720 > th dose dependent rect. 11 13
781 129.38 temperature 15 90 > th dose dependent rect. 3 5
835 129.95 atmosphere 1010 270 < th dose independent rect. 14 17
837 129.95 temperature 25 10 < th dose dependent rect. 22 12
868 130.19 temperature 20 10 < th dose dependent rect. 12 23
883 130.32 temperature 25 10 < th dose dependent rect. 18 16
939 130.71 humidity 50 14400 > th dose independent rect. 5 4
947 130.76 temperature 25 10 < th dose dependent rect. 16 18
973 130.91 atmosphere 1010 270 < th dose independent rect. 12 10