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Os07g0660100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0455) R2 : 0.913
β1 : -1.45 (0.167) R2dD : 0.0148 R2D : 0.0269
β2 : 6.91 (0.138) R2dC : 0.656 R2C : 0.832
β3 : -2.37 (0.181) R2dE : 0.0479 R2E : 0.236
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.406 (0.0994) R2dN8 : 0.00473 R2N8 : 0.00701
σ : 0.848
deviance : 331.72
__
_____
C
peak time of C : 17.3
E
wheather : humidity
threshold : 91.87
memory length : 89
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.1
open length of G : 2.65

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.17 0.833 10.9 -1.45 6.97 -2 2.72 -0.504 0.438 17.3 91.23 89 3.02 3.09
312.23 0.823 10.9 -1.42 6.98 -2.09 3.08 -- 0.453 17.3 91.56 90 3.03 2.78
329.03 0.845 10.9 -1.45 6.97 -1.9 -- -1.72 0.446 17.4 91.76 87 3.02 3.53
331.72 0.848 10.9 -1.45 6.91 -2.37 -- -- 0.406 17.3 91.87 89 3.1 2.65
1297.77 1.68 10.7 -1.19 -- -5.06 -- -0.0718 1.03 -- 53.77 45 1.5 8.13
417.53 0.958 10.9 -1.58 7.84 -- 4.07 -- 0.702 17.3 -- -- -- --
458.76 1 10.9 -1.59 7.86 -- -- -- 0.721 17.3 -- -- -- --
1294.45 1.68 10.7 -1.51 -- -5.17 -- -- 0.99 -- 53.75 45 1.48 8.15
384.44 0.913 10.9 -- 6.94 -2.46 -- -- 0.565 17.3 92.07 92 3.03 2.68
3685.65 2.84 10.8 -1.86 -- -- -- -- 0.525 -- -- -- -- --
525.15 1.07 10.8 -- 7.89 -- -- -- 0.898 17.3 -- -- -- --
1353.95 1.71 10.6 -- -- -5.2 -- -- 1.17 -- 54.98 48 1.47 8.13
3776.66 2.87 10.7 -- -- -- -- -- 0.731 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 321.24 humidity 90.0 90 > th dose dependent rect. 3 3
2 321.58 temperature 20.0 10 > th dose dependent rect. 3 3
3 322.00 temperature 20.0 90 > th dose dependent rect. 3 3
5 323.01 wind 3.0 30 < th dose dependent rect. 3 3
6 325.16 humidity 90.0 90 > th dose independent rect. 3 3
9 326.40 radiation 40.0 90 < th dose dependent rect. 6 21
11 326.97 temperature 20.0 90 > th dose independent rect. 3 3
13 328.16 temperature 30.0 10 < th dose dependent rect. 6 6
14 328.45 temperature 30.0 10 < th dose dependent rect. 6 8
16 328.77 temperature 30.0 90 < th dose dependent rect. 6 5
20 329.24 radiation 40.0 90 < th dose independent rect. 6 21
23 329.56 atmosphere 1015.0 90 < th dose dependent rect. 3 3
34 330.97 radiation 20.0 90 < th dose independent rect. 6 21
36 331.11 temperature 25.0 90 < th dose independent rect. 3 3
64 334.87 humidity 90.0 10 > th dose independent rect. 3 3
81 336.45 wind 1.0 90 < th dose independent rect. 4 2
82 336.48 humidity 90.0 270 > th dose dependent rect. 2 1
85 336.77 radiation 20.0 10 < th dose independent rect. 6 21
87 337.00 temperature 30.0 4320 > th dose dependent rect. 18 1
130 338.96 atmosphere 1010.0 270 < th dose dependent rect. 1 4
136 339.55 temperature 25.0 90 < th dose independent rect. 6 5
141 339.81 wind 3.0 30 < th dose dependent rect. 3 8
184 342.13 radiation 40.0 90 < th dose dependent rect. 6 9
197 342.56 temperature 20.0 270 > th dose independent rect. 3 1
211 343.23 precipitation 0.1 30 < th dose independent rect. 6 21
212 343.23 precipitation 0.1 30 < th dose dependent rect. 6 21
223 343.67 temperature 15.0 90 > th dose independent rect. 6 21
270 345.50 wind 1.0 90 < th dose dependent rect. 4 10
278 345.81 wind 1.0 90 < th dose dependent rect. 4 17
282 345.89 humidity 90.0 270 > th dose independent rect. 1 2
285 346.05 precipitation 0.1 30 < th dose independent rect. 3 3
286 346.05 precipitation 0.1 30 < th dose dependent rect. 3 3
297 346.15 temperature 15.0 90 > th dose independent rect. 19 11
303 346.39 temperature 25.0 270 < th dose independent rect. 6 2
327 347.20 atmosphere 1005.0 270 > th dose dependent rect. 23 9
332 347.32 temperature 10.0 30 > th dose independent rect. 3 3
335 347.32 humidity 50.0 30 > th dose independent rect. 3 3
338 347.32 atmosphere 995.0 30 > th dose independent rect. 3 3
339 347.32 atmosphere 1010.0 30 < th dose independent rect. 3 3
341 347.32 radiation 20.0 30 < th dose independent rect. 3 3
363 347.77 wind 9.0 30 < th dose independent rect. 6 21
404 348.71 atmosphere 1015.0 1440 < th dose independent rect. 3 4
409 348.91 temperature 25.0 270 < th dose independent rect. 1 2
434 349.53 radiation 20.0 1440 < th dose independent rect. 8 2
436 349.62 temperature 30.0 270 < th dose dependent rect. 6 2
455 349.80 radiation 30.0 1440 < th dose dependent rect. 7 3
464 350.05 temperature 15.0 270 > th dose independent rect. 3 23
470 350.26 humidity 50.0 90 > th dose dependent rect. 18 12
474 350.37 radiation 1.0 1440 > th dose dependent rect. 6 5
479 350.43 radiation 40.0 1440 < th dose dependent rect. 24 11
487 350.54 wind 1.0 30 < th dose independent rect. 3 8
494 350.58 radiation 40.0 1440 < th dose dependent rect. 2 9
523 350.73 radiation 40.0 1440 < th dose dependent rect. 19 16
528 350.81 radiation 40.0 90 < th dose dependent rect. 3 3
583 351.34 humidity 70.0 90 > th dose independent rect. 18 12
611 351.51 radiation 30.0 90 < th dose dependent rect. 6 5
656 351.87 temperature 25.0 720 > th dose dependent rect. 20 3
659 351.89 radiation 40.0 1440 < th dose dependent sin 8 NA
664 351.93 radiation 1.0 1440 > th dose dependent sin 9 NA
687 352.28 radiation 20.0 1440 < th dose independent rect. 24 10
689 352.29 radiation 10.0 1440 > th dose independent rect. 6 5
696 352.36 wind 1.0 30 < th dose independent rect. 3 10
698 352.37 radiation 20.0 1440 < th dose independent rect. 5 6
699 352.37 radiation 20.0 1440 < th dose independent rect. 2 9
706 352.40 radiation 20.0 1440 < th dose independent rect. 18 17
738 352.45 atmosphere 995.0 30 > th dose independent rect. 6 21
855 353.27 humidity 90.0 10 > th dose dependent rect. 3 19
856 353.28 radiation 10.0 1440 > th dose independent sin 9 NA
863 353.30 radiation 40.0 90 < th dose dependent rect. 6 11
878 353.42 humidity 60.0 14400 > th dose independent rect. 4 3
902 353.54 temperature 10.0 270 > th dose dependent rect. 1 12
918 353.72 radiation 40.0 90 < th dose independent rect. 6 9
920 353.73 precipitation 0.1 90 < th dose independent rect. 6 13
921 353.73 precipitation 0.1 90 < th dose dependent rect. 6 13
922 353.78 radiation 1.0 10 > th dose independent rect. 5 1
933 353.78 atmosphere 995.0 270 > th dose dependent rect. 21 12
996 354.29 temperature 15.0 720 > th dose independent rect. 18 3