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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0659700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SKP1 interacting partner 5.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.78 (0.033) R2 : 0.392
β1 : -0.866 (0.121) R2dD : 0.0712 R2D : 0.0509
β2 : 1.16 (0.0784) R2dC : 0.295 R2C : 0.293
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.36 (0.0704) R2dN8 : 0.0468 R2N8 : 0.0197
σ : 0.62
deviance : 175.38
__
_____
C
peak time of C : 12.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
148.04 0.572 4.77 -0.668 1.09 -0.14 -2.57 -2.56 -0.339 12.2 51 293 -- --
155.34 0.58 4.77 -0.766 1.04 -0.511 -2.18 -- -0.373 11.4 47.87 248 -- --
158.25 0.586 4.76 -0.625 1.07 0.393 -- -3.32 -0.314 13 -26.61 793 -- --
174.58 0.615 4.78 -0.875 1.09 -0.258 -- -- -0.367 12.2 47.02 242 -- --
213.76 0.681 4.77 -0.538 -- 1.35 -- -3.96 -0.296 -- -18.32 955 -- --
159.03 0.591 4.77 -0.792 1.15 -- -1.98 -- -0.353 12.3 -- -- -- --
175.38 0.62 4.78 -0.866 1.16 -- -- -- -0.36 12.6 -- -- -- --
214.91 0.686 4.8 -0.891 -- -1.33 -- -- -0.391 -- 39.96 3 -- --
194.56 0.65 4.76 -- 1.11 -0.195 -- -- -0.266 12.4 48.02 165 -- --
260.2 0.754 4.8 -0.907 -- -- -- -- -0.381 -- -- -- -- --
195.15 0.653 4.76 -- 1.18 -- -- -- -0.264 12.7 -- -- -- --
235.64 0.715 4.78 -- -- -1.13 -- -- -0.293 -- 50 2 -- --
281.91 0.784 4.78 -- -- -- -- -- -0.28 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.99 radiation 1.0 720 > th dose independent rect. 7 6
5 144.30 temperature 30.0 270 < th dose independent rect. 9 11
6 144.34 humidity 70.0 90 > th dose independent rect. 17 13
7 144.70 temperature 15.0 720 > th dose independent rect. 7 6
9 144.82 radiation 10.0 720 < th dose dependent rect. 15 10
12 144.95 humidity 90.0 720 < th dose independent rect. 9 4
14 145.14 temperature 30.0 270 < th dose independent rect. 15 14
16 145.18 atmosphere 1015.0 720 < th dose independent rect. 1 19
17 145.19 temperature 30.0 90 < th dose independent rect. 17 13
20 145.26 humidity 50.0 14400 > th dose independent rect. 13 1
29 145.54 temperature 15.0 270 > th dose independent rect. 8 12
32 145.56 humidity 90.0 720 < th dose independent rect. 11 2
33 145.58 radiation 1.0 720 < th dose dependent rect. 4 21
34 145.64 radiation 1.0 720 < th dose dependent rect. 20 21
38 145.71 radiation 1.0 720 < th dose independent rect. 7 18
44 145.75 humidity 50.0 270 > th dose dependent rect. 19 20
49 145.81 wind 1.0 10 > th dose independent sin 14 NA
50 145.81 radiation 10.0 720 < th dose independent rect. 15 10
52 145.85 humidity 50.0 270 > th dose dependent rect. 20 18
55 145.89 humidity 50.0 14400 < th dose independent rect. 13 1
59 146.01 radiation 1.0 720 > th dose independent rect. 8 9
63 146.08 radiation 1.0 720 > th dose independent rect. 8 11
76 146.10 radiation 1.0 720 < th dose independent rect. 4 21
83 146.13 radiation 1.0 720 > th dose independent rect. 8 22
98 146.20 wind 1.0 10 > th dose independent rect. 10 23
103 146.28 atmosphere 1010.0 270 < th dose independent rect. 1 11
104 146.28 temperature 15.0 720 > th dose independent rect. 1 19
114 146.38 temperature 30.0 720 < th dose independent rect. 8 5
117 146.38 humidity 90.0 30 < th dose dependent rect. 10 15
119 146.39 radiation 1.0 720 > th dose independent rect. 16 21
125 146.43 radiation 10.0 720 > th dose independent rect. 11 2
134 146.52 wind 1.0 10 > th dose independent rect. 15 14
140 146.54 humidity 50.0 720 > th dose dependent rect. 19 6
144 146.55 temperature 15.0 10 > th dose dependent rect. 10 10
150 146.58 humidity 90.0 10 < th dose dependent sin 17 NA
155 146.63 wind 1.0 10 > th dose independent rect. 13 16
156 146.63 humidity 90.0 10 < th dose dependent rect. 10 10
162 146.64 humidity 90.0 30 < th dose dependent rect. 10 20
181 146.69 temperature 15.0 720 > th dose independent rect. 18 16
183 146.70 temperature 15.0 720 > th dose independent rect. 18 18
186 146.72 temperature 15.0 720 > th dose independent rect. 15 15
203 146.78 radiation 1.0 720 < th dose independent rect. 20 21
205 146.79 wind 1.0 10 > th dose independent rect. 23 23
239 146.91 temperature 15.0 90 > th dose independent rect. 11 12
251 146.94 atmosphere 1015.0 4320 > th dose independent rect. 10 3
252 146.94 temperature 15.0 720 > th dose independent rect. 15 22
256 146.95 atmosphere 1010.0 720 < th dose independent rect. 18 11
267 146.96 humidity 90.0 30 < th dose dependent rect. 10 23
268 146.97 atmosphere 1015.0 4320 < th dose independent rect. 10 3
310 147.05 atmosphere 1015.0 4320 > th dose independent rect. 9 5
319 147.06 atmosphere 1015.0 4320 < th dose independent rect. 9 5
320 147.06 temperature 15.0 720 > th dose independent rect. 17 20
330 147.09 temperature 30.0 270 < th dose independent rect. 22 23
338 147.11 humidity 50.0 270 > th dose independent rect. 9 11
345 147.12 atmosphere 1010.0 720 < th dose independent rect. 22 7
347 147.12 humidity 80.0 90 < th dose independent rect. 11 10
349 147.12 atmosphere 1015.0 4320 > th dose dependent rect. 10 1
353 147.13 temperature 30.0 270 < th dose independent sin 19 NA
364 147.15 atmosphere 1010.0 270 < th dose independent rect. 9 12
374 147.18 atmosphere 1015.0 4320 < th dose independent rect. 7 9
377 147.18 atmosphere 995.0 720 > th dose dependent rect. 20 12
388 147.20 atmosphere 995.0 720 > th dose dependent rect. 23 2
391 147.21 atmosphere 1015.0 4320 > th dose independent rect. 7 9
393 147.21 atmosphere 1015.0 4320 < th dose independent rect. 5 12
394 147.21 atmosphere 1015.0 4320 < th dose independent rect. 4 14
395 147.21 temperature 30.0 720 < th dose independent rect. 1 19
405 147.23 temperature 15.0 720 > th dose independent rect. 22 8
414 147.24 humidity 50.0 14400 < th dose independent rect. 12 5
418 147.24 atmosphere 1015.0 4320 > th dose independent rect. 5 12
427 147.25 humidity 50.0 14400 > th dose independent rect. 6 9
429 147.25 temperature 15.0 720 > th dose independent rect. 18 10
438 147.25 humidity 50.0 14400 > th dose independent rect. 20 19
443 147.26 humidity 50.0 14400 > th dose independent rect. 23 16
476 147.30 radiation 1.0 270 > th dose dependent rect. 16 3
491 147.31 precipitation 0.1 720 < th dose independent rect. 15 15
494 147.31 precipitation 0.1 720 < th dose dependent rect. 15 15
517 147.34 precipitation 0.1 720 < th dose independent rect. 8 15
520 147.34 temperature 30.0 270 < th dose independent rect. 24 23
524 147.34 precipitation 0.1 720 < th dose dependent rect. 8 15
527 147.35 humidity 50.0 14400 < th dose independent rect. 9 5
533 147.35 humidity 60.0 14400 < th dose dependent rect. 12 2
534 147.35 temperature 15.0 90 > th dose dependent rect. 10 13
552 147.38 atmosphere 1015.0 4320 > th dose dependent rect. 4 12
573 147.41 humidity 50.0 720 > th dose independent rect. 3 8
582 147.41 temperature 15.0 30 > th dose dependent rect. 10 15
599 147.43 atmosphere 1015.0 4320 > th dose independent rect. 11 1
608 147.43 humidity 50.0 14400 > th dose independent rect. 12 22
634 147.45 precipitation 0.1 720 < th dose independent rect. 1 18
641 147.45 precipitation 0.1 720 < th dose dependent rect. 1 18
643 147.46 temperature 30.0 720 < th dose independent rect. 1 12
650 147.47 atmosphere 1015.0 4320 > th dose dependent rect. 9 3
652 147.47 humidity 60.0 270 < th dose dependent rect. 16 17
656 147.48 humidity 50.0 14400 > th dose independent rect. 12 9
659 147.48 humidity 50.0 14400 > th dose independent rect. 12 12
660 147.48 humidity 90.0 10 < th dose independent rect. 11 12
661 147.48 temperature 15.0 720 > th dose independent rect. 23 15
668 147.49 temperature 30.0 720 < th dose independent rect. 15 8
675 147.49 humidity 50.0 14400 > th dose independent rect. 12 19
692 147.50 atmosphere 1015.0 4320 > th dose dependent rect. 8 5
697 147.51 humidity 50.0 720 > th dose independent rect. 16 21
698 147.51 humidity 50.0 14400 < th dose independent rect. 12 22
701 147.52 radiation 1.0 720 > th dose independent sin 0 NA
705 147.52 atmosphere 1015.0 4320 > th dose dependent rect. 7 7
748 147.55 humidity 60.0 270 < th dose independent rect. 16 17
759 147.56 humidity 50.0 14400 > th dose independent sin 1 NA
775 147.58 atmosphere 1010.0 90 < th dose independent rect. 11 12
790 147.60 temperature 30.0 720 < th dose independent rect. 1 9
814 147.61 temperature 10.0 43200 > th dose independent rect. 11 9
833 147.62 humidity 70.0 10 > th dose independent sin 12 NA
836 147.62 atmosphere 1015.0 4320 < th dose independent sin 1 NA
841 147.62 temperature 15.0 10 > th dose dependent sin 17 NA
845 147.63 humidity 50.0 14400 < th dose independent sin 1 NA
848 147.63 atmosphere 1015.0 4320 > th dose independent sin 1 NA
851 147.63 temperature 30.0 270 < th dose independent rect. 13 8
859 147.64 humidity 50.0 14400 < th dose independent rect. 16 23
864 147.65 precipitation 0.1 720 < th dose independent rect. 18 9
866 147.65 precipitation 0.1 720 < th dose dependent rect. 18 9
872 147.66 wind 9.0 30 < th dose independent sin 1 NA
873 147.66 temperature 15.0 720 > th dose independent sin 1 NA
881 147.66 humidity 60.0 270 > th dose independent rect. 16 23
886 147.67 humidity 50.0 14400 > th dose independent rect. 16 23
897 147.68 humidity 60.0 270 > th dose independent rect. 13 22
929 147.70 radiation 10.0 720 < th dose dependent sin 17 NA
939 147.71 atmosphere 1010.0 270 < th dose independent sin 8 NA
944 147.71 humidity 50.0 14400 > th dose independent rect. 9 12
955 147.71 humidity 50.0 14400 > th dose independent rect. 6 18
961 147.71 humidity 50.0 14400 > th dose independent rect. 3 21
969 147.72 temperature 30.0 720 < th dose independent rect. 3 8