Os07g0658300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pleckstrin homology-type domain containing protein.
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Os07g0658300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pleckstrin homology-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.84 | 0.285 | 8.92 | -0.829 | 0.662 | -0.472 | -0.918 | -1.62 | -0.0609 | 7.6 | -0.001373 | 277 | -- | -- |
| 40.92 | 0.298 | 8.91 | -0.785 | 0.583 | -0.7 | -1.35 | -- | -0.0262 | 8.98 | -0.04553 | 327 | -- | -- |
| 38.71 | 0.29 | 8.91 | -0.842 | 0.725 | -0.376 | -- | -1.7 | -0.0646 | 7.24 | -5.44e-05 | 209 | -- | -- |
| 45.08 | 0.313 | 8.92 | -0.85 | 0.701 | -0.345 | -- | -- | -0.0596 | 7.06 | 1.662 | 275 | -- | -- |
| 53.93 | 0.342 | 8.92 | -0.815 | -- | -0.832 | -- | -0.602 | -0.00417 | -- | -27.34 | 649 | -- | -- |
| 46.27 | 0.319 | 8.92 | -0.857 | 0.807 | -- | -0.418 | -- | -0.0851 | 6.31 | -- | -- | -- | -- |
| 46.58 | 0.32 | 8.92 | -0.864 | 0.807 | -- | -- | -- | -0.0844 | 6.1 | -- | -- | -- | -- |
| 54.28 | 0.343 | 8.92 | -0.798 | -- | -0.848 | -- | -- | 0.00946 | -- | -24.51 | 686 | -- | -- |
| 63.97 | 0.373 | 8.89 | -- | 0.659 | -0.324 | -- | -- | 0.0399 | 6.83 | 10 | 362 | -- | -- |
| 80.31 | 0.419 | 8.94 | -0.841 | -- | -- | -- | -- | -0.0664 | -- | -- | -- | -- | -- |
| 66.23 | 0.381 | 8.9 | -- | 0.794 | -- | -- | -- | 0.0118 | 6.16 | -- | -- | -- | -- |
| 71.16 | 0.393 | 8.9 | -- | -- | -0.875 | -- | -- | 0.106 | -- | -12.76 | 706 | -- | -- |
| 98.95 | 0.464 | 8.91 | -- | -- | -- | -- | -- | 0.0269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.80 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 4 | 33.94 | temperature | 15 | 30 | > th | dose dependent | rect. | 24 | 18 |
| 11 | 34.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 20 | 34.56 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 8 |
| 25 | 34.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 71 | 34.99 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 17 |
| 104 | 35.14 | radiation | 40 | 270 | < th | dose dependent | rect. | 17 | 17 |
| 122 | 35.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 172 | 35.47 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 10 |
| 184 | 35.52 | temperature | 25 | 270 | < th | dose independent | sin | 9 | NA |
| 213 | 35.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 245 | 35.66 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 249 | 35.68 | radiation | 20 | 270 | < th | dose independent | rect. | 17 | 17 |
| 325 | 35.84 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 10 |
| 408 | 35.99 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 409 | 36.00 | temperature | 30 | 270 | < th | dose independent | sin | 3 | NA |
| 422 | 36.02 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 448 | 36.07 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 472 | 36.12 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 3 | 9 |
| 488 | 36.15 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 10 |
| 497 | 36.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 17 |
| 512 | 36.18 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 8 | 9 |
| 529 | 36.20 | temperature | 25 | 30 | > th | dose independent | rect. | 24 | 18 |
| 595 | 36.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 649 | 36.35 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 14 |
| 744 | 36.47 | wind | 1 | 270 | > th | dose independent | rect. | 11 | 15 |
| 818 | 36.57 | radiation | 1 | 720 | < th | dose dependent | sin | 9 | NA |
| 839 | 36.59 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 10 |
| 841 | 36.59 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 866 | 36.62 | temperature | 30 | 10 | < th | dose independent | rect. | 5 | 9 |
| 886 | 36.63 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 896 | 36.64 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 19 |
| 907 | 36.66 | radiation | 1 | 720 | < th | dose independent | sin | 9 | NA |
| 920 | 36.66 | radiation | 1 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 922 | 36.67 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 14 |
| 942 | 36.68 | radiation | 1 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 944 | 36.69 | wind | 7 | 270 | < th | dose independent | rect. | 17 | 16 |
| 948 | 36.69 | radiation | 1 | 30 | < th | dose independent | rect. | 19 | 23 |
| 970 | 36.71 | wind | 1 | 270 | > th | dose independent | rect. | 9 | 8 |
| 997 | 36.74 | wind | 1 | 90 | > th | dose independent | rect. | 13 | 16 |