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Os07g0658100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0181) R2 : 0.533
β1 : -1.05 (0.0662) R2dD : 0.266 R2D : 0.216
β2 : 0.748 (0.0461) R2dC : 0.271 R2C : 0.25
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.253 (0.0386) R2dN8 : 0.059 R2N8 : -0.0014
σ : 0.34
deviance : 52.69
__
_____
C
peak time of C : 7.87
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.85 0.308 11 -0.546 0.743 -0.522 0.55 0.702 -0.0305 7.68 20.8 3859 -- --
43.7 0.308 11 -0.652 0.729 -0.644 0.541 -- -0.0275 7.61 21.17 3959 -- --
43.7 0.308 11 -0.535 0.742 -0.53 -- 0.67 -0.032 7.7 20.81 3866 -- --
44.35 0.31 11 -0.675 0.747 -0.627 -- -- -0.057 7.63 20.9 3858 -- --
72.93 0.398 11 -0.549 -- -0.598 -- 0.466 -0.0146 -- 21.01 3637 -- --
51.82 0.337 11.1 -1.06 0.749 -- 0.552 -- -0.253 7.81 -- -- -- --
52.69 0.34 11.1 -1.05 0.748 -- -- -- -0.253 7.87 -- -- -- --
72.83 0.397 11 -0.746 -- -0.617 -- -- -0.0636 -- 21.39 2151 -- --
46.25 0.317 11 -- 0.749 -0.934 -- -- 0.0502 7.73 17 47470 -- --
83.1 0.426 11.1 -1.04 -- -- -- -- -0.243 -- -- -- -- --
81.59 0.423 11 -- 0.741 -- -- -- -0.136 7.96 -- -- -- --
76.01 0.406 11 -- -- -1 -- -- 0.0697 -- 16.82 47520 -- --
111.56 0.493 11.1 -- -- -- -- -- -0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.47 wind 1 43200 < th dose dependent rect. 4 4
2 41.83 wind 1 14400 < th dose dependent rect. 19 12
3 41.87 wind 1 14400 < th dose dependent rect. 20 9
13 42.06 wind 1 14400 > th dose independent rect. 19 12
16 42.07 wind 1 14400 > th dose independent rect. 20 10
21 42.14 wind 3 14400 < th dose dependent rect. 23 1
23 42.15 wind 1 43200 < th dose dependent rect. 6 1
24 42.18 wind 1 14400 < th dose independent rect. 19 12
52 42.42 wind 3 43200 < th dose dependent rect. 19 4
53 42.42 wind 1 43200 < th dose dependent rect. 4 7
66 42.51 humidity 70 43200 > th dose dependent rect. 19 2
68 42.52 wind 1 43200 > th dose independent rect. 22 4
71 42.53 humidity 90 14400 > th dose dependent rect. 5 1
77 42.56 temperature 20 4320 < th dose independent rect. 22 1
78 42.56 temperature 20 4320 > th dose independent rect. 21 2
90 42.59 wind 1 14400 < th dose dependent sin 12 NA
92 42.60 wind 1 43200 > th dose independent rect. 4 4
97 42.63 temperature 20 4320 < th dose independent rect. 19 5
106 42.67 wind 1 43200 < th dose independent rect. 23 3
121 42.70 wind 9 43200 > th dose independent rect. 10 4
154 42.77 temperature 20 1440 < th dose independent rect. 21 6
189 42.84 wind 9 43200 < th dose independent rect. 10 4
199 42.85 radiation 40 43200 > th dose independent rect. 13 1
211 42.87 temperature 20 1440 < th dose independent rect. 21 9
220 42.88 wind 1 14400 > th dose dependent rect. 22 1
235 42.91 wind 3 14400 < th dose independent rect. 8 1
240 42.92 wind 3 43200 < th dose independent rect. 19 3
267 42.95 wind 9 43200 < th dose independent rect. 9 6
273 42.96 wind 1 14400 > th dose independent sin 11 NA
274 42.96 wind 9 43200 > th dose independent rect. 9 6
313 43.02 wind 3 43200 > th dose independent rect. 21 1
327 43.03 wind 1 43200 > th dose independent rect. 21 15
329 43.03 wind 1 43200 < th dose dependent rect. 16 10
337 43.05 wind 3 43200 > th dose independent rect. 19 3
348 43.06 wind 3 43200 < th dose independent rect. 21 1
354 43.07 wind 3 14400 > th dose independent rect. 8 1
360 43.07 temperature 25 270 < th dose dependent rect. 8 15
369 43.08 humidity 60 43200 > th dose independent rect. 20 14
373 43.09 temperature 20 4320 > th dose independent sin 14 NA
385 43.09 wind 1 43200 > th dose independent rect. 19 17
399 43.10 humidity 60 43200 < th dose independent rect. 20 14
403 43.10 wind 1 43200 < th dose dependent rect. 2 12
435 43.15 wind 1 14400 < th dose independent sin 11 NA
438 43.15 wind 1 43200 < th dose independent rect. 4 4
443 43.15 wind 3 43200 < th dose dependent rect. 8 1
457 43.16 wind 1 43200 < th dose dependent rect. 13 13
460 43.17 temperature 20 4320 < th dose independent sin 14 NA
461 43.17 radiation 20 14400 > th dose independent rect. 6 1
565 43.27 wind 1 43200 > th dose independent rect. 16 10
601 43.29 wind 7 43200 > th dose dependent rect. 10 4
632 43.32 temperature 20 1440 < th dose independent sin 11 NA
633 43.32 radiation 30 43200 < th dose independent rect. 12 1
637 43.32 wind 1 43200 < th dose independent rect. 16 10
641 43.33 wind 3 43200 < th dose independent rect. 11 1
650 43.33 wind 1 43200 < th dose dependent rect. 19 18
670 43.35 radiation 20 43200 > th dose dependent rect. 13 1
676 43.36 temperature 20 1440 > th dose independent rect. 1 1
712 43.37 wind 1 43200 < th dose dependent rect. 10 18
728 43.39 wind 3 43200 > th dose independent rect. 11 1
730 43.39 humidity 80 43200 > th dose independent rect. 6 3
749 43.40 humidity 80 43200 < th dose independent rect. 17 7
757 43.41 radiation 10 1440 < th dose independent rect. 16 1
776 43.42 temperature 20 4320 < th dose independent rect. 11 13
781 43.42 temperature 20 4320 < th dose independent rect. 9 15
822 43.45 humidity 80 43200 > th dose independent rect. 18 5
858 43.48 humidity 80 43200 > th dose independent rect. 17 7
904 43.49 atmosphere 995 43200 < th dose dependent rect. 11 19
920 43.51 radiation 10 43200 < th dose independent rect. 7 1
953 43.52 temperature 20 4320 < th dose dependent rect. 22 1
961 43.53 humidity 80 43200 < th dose independent rect. 19 2
962 43.53 humidity 80 43200 < th dose independent rect. 18 4
988 43.54 wind 1 43200 < th dose independent rect. 19 18
996 43.54 radiation 10 43200 < th dose dependent rect. 6 2
998 43.54 wind 1 43200 < th dose dependent rect. 8 20
1000 43.54 radiation 40 10 < th dose dependent rect. 24 20