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Os07g0658000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0288) R2 : 0.893
β1 : -- (--) R2dD : -- R2D : --
β2 : 5.23 (0.0861) R2dC : 1.19 R2C : 0.412
β3 : 2.91 (0.0768) R2dE : 0.459 R2E : -0.296
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.471 (0.0604) R2dN8 : 0.0182 R2N8 : 0.00675
σ : 0.539
deviance : 133.91
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_____
C
peak time of C : 7.71
E
wheather : radiation
threshold : 0.3464
memory length : 122
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 9.39
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
118.22 0.511 11.2 -0.526 5.29 2.79 -1.1 -1.62 -0.528 7.62 0.2276 93 9.02 --
125.73 0.522 11.2 -0.446 5.1 2.74 0.199 -- -0.532 7.52 0.3101 120 9.67 --
119.52 0.509 11.2 -0.588 5.23 2.83 -- -1.06 -0.517 7.67 0.3354 113 9.21 --
124.38 0.519 11.2 -0.64 5.24 2.88 -- -- -0.534 7.67 0.4144 120 9.33 --
235.25 0.714 11.2 -0.163 -- 4.27 -- -0.642 -0.113 -- 0.2929 706 6.36 --
209.55 0.679 11.3 -0.776 4.42 -- -0.352 -- -0.652 5.56 -- -- -- --
209.85 0.678 11.3 -0.777 4.42 -- -- -- -0.65 5.57 -- -- -- --
185.29 0.634 11.4 -0.568 -- 5.41 -- -- -0.631 -- 0.6677 761 7.31 --
133.91 0.539 11.2 -- 5.23 2.91 -- -- -0.471 7.71 0.3464 122 9.39 --
1224.34 1.64 11.3 -0.633 -- -- -- -- -0.544 -- -- -- -- --
225.77 0.703 11.3 -- 4.41 -- -- -- -0.564 5.58 -- -- -- --
178.84 0.623 11.3 -- -- 5.84 -- -- -0.48 -- 0.3287 837 8.96 --
1234.92 1.64 11.3 -- -- -- -- -- -0.473 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 123.98 temperature 20.0 90 > th dose independent rect. 13 6
2 124.74 radiation 1.0 90 < th dose dependent sin 15 NA
3 125.64 temperature 20.0 270 > th dose independent rect. 13 4
5 125.64 radiation 1.0 270 > th dose independent rect. 12 6
7 126.19 radiation 1.0 270 > th dose independent rect. 12 17
19 126.45 radiation 1.0 270 > th dose independent rect. 11 19
21 127.84 wind 1.0 90 > th dose independent rect. 13 6
23 127.96 radiation 1.0 270 > th dose independent rect. 13 4
24 128.18 wind 9.0 90 < th dose independent rect. 19 18
38 128.49 humidity 90.0 90 < th dose independent rect. 13 6
39 128.49 radiation 40.0 30 < th dose independent rect. 13 6
40 128.53 precipitation 0.1 90 < th dose independent rect. 13 6
41 128.53 precipitation 0.1 90 < th dose dependent rect. 13 6
44 128.86 temperature 10.0 90 > th dose independent rect. 13 6
46 128.86 atmosphere 1010.0 90 < th dose independent rect. 13 6
48 128.86 temperature 10.0 90 > th dose independent rect. 19 18
49 128.86 atmosphere 995.0 90 > th dose independent rect. 19 18
51 129.76 temperature 10.0 90 > th dose dependent rect. 13 6
52 129.99 wind 9.0 90 < th dose independent rect. 13 6
69 130.67 radiation 1.0 270 < th dose independent sin 17 NA
72 131.22 atmosphere 995.0 90 > th dose independent rect. 13 6
73 131.25 radiation 1.0 270 < th dose dependent sin 18 NA
88 131.67 precipitation 0.1 90 < th dose independent rect. 19 18
89 131.67 precipitation 0.1 90 < th dose dependent rect. 19 18
96 132.20 wind 1.0 90 > th dose dependent rect. 13 6
104 132.41 humidity 50.0 270 > th dose independent rect. 17 19
105 132.42 wind 9.0 270 < th dose independent rect. 17 19
116 132.71 wind 1.0 270 > th dose independent rect. 13 3
122 132.79 wind 9.0 270 < th dose independent rect. 16 21
129 132.88 temperature 10.0 270 > th dose independent rect. 17 19
131 132.92 temperature 10.0 1440 > th dose independent rect. 15 5
134 132.92 temperature 10.0 1440 > th dose independent rect. 20 19
139 133.03 atmosphere 995.0 270 > th dose independent rect. 13 3
146 133.09 radiation 1.0 270 > th dose independent sin 18 NA
157 133.37 humidity 50.0 90 > th dose independent rect. 19 18
165 133.65 wind 9.0 270 < th dose independent rect. 13 3
166 133.69 atmosphere 995.0 30 > th dose dependent rect. 14 5
174 133.97 atmosphere 995.0 270 > th dose independent rect. 17 19
176 134.06 precipitation 0.1 270 < th dose independent rect. 17 19
177 134.06 precipitation 0.1 270 < th dose dependent rect. 17 19
209 135.37 radiation 20.0 270 < th dose dependent rect. 16 9
214 135.67 wind 1.0 10 > th dose dependent rect. 14 5
240 136.85 wind 1.0 90 > th dose independent rect. 19 18
246 136.96 humidity 50.0 30 > th dose independent rect. 14 5
256 137.29 radiation 1.0 90 > th dose independent sin 15 NA
267 137.50 atmosphere 995.0 270 > th dose dependent rect. 13 3
275 137.58 atmosphere 995.0 1440 > th dose independent rect. 20 18
305 138.03 humidity 50.0 270 > th dose independent rect. 13 3
322 138.33 atmosphere 995.0 270 > th dose independent rect. 14 1
324 138.34 humidity 50.0 270 > th dose independent rect. 14 1
350 138.80 radiation 40.0 10 < th dose dependent rect. 13 6
354 138.89 radiation 1.0 270 < th dose dependent rect. 16 7
361 139.01 radiation 1.0 270 < th dose independent rect. 15 10
363 139.05 radiation 1.0 270 > th dose independent rect. 6 6
386 139.64 temperature 15.0 270 > th dose independent rect. 6 6
404 139.75 temperature 10.0 270 > th dose dependent rect. 12 18
417 139.94 atmosphere 1015.0 90 < th dose independent rect. 19 18
419 140.01 temperature 10.0 270 > th dose independent rect. 22 9
420 140.01 temperature 30.0 270 < th dose independent rect. 22 9
421 140.01 humidity 50.0 270 > th dose independent rect. 22 9
423 140.01 atmosphere 995.0 270 > th dose independent rect. 22 9
424 140.01 radiation 40.0 270 < th dose independent rect. 22 9
425 140.01 temperature 10.0 270 > th dose independent rect. 7 15
431 140.05 wind 9.0 270 < th dose independent rect. 22 9
436 140.11 precipitation 0.1 270 < th dose independent rect. 12 18
438 140.11 precipitation 0.1 270 < th dose dependent rect. 12 18
442 140.23 wind 9.0 270 < th dose independent rect. 7 15
444 140.30 wind 1.0 270 > th dose independent rect. 17 19
445 140.33 radiation 40.0 270 < th dose dependent rect. 22 10
476 140.72 precipitation 0.1 270 < th dose independent rect. 6 6
477 140.72 precipitation 0.1 270 < th dose dependent rect. 6 6
480 140.79 wind 9.0 270 < th dose independent rect. 6 6
486 140.91 atmosphere 995.0 270 > th dose independent rect. 6 6
487 140.91 atmosphere 1015.0 270 < th dose independent rect. 6 6
488 140.91 radiation 20.0 270 < th dose independent rect. 16 9
489 140.91 temperature 10.0 270 > th dose independent rect. 12 18
512 141.15 humidity 50.0 270 > th dose independent rect. 6 6
513 141.16 humidity 50.0 270 > th dose dependent rect. 22 9
525 141.34 radiation 20.0 30 < th dose independent rect. 13 6
535 141.38 humidity 50.0 270 > th dose independent rect. 17 8
536 141.39 wind 1.0 270 > th dose independent rect. 6 6
541 141.53 precipitation 0.1 270 < th dose independent rect. 22 9
542 141.53 precipitation 0.1 270 < th dose dependent rect. 22 9
547 141.68 wind 9.0 270 < th dose independent rect. 12 18
548 141.70 atmosphere 995.0 270 > th dose dependent rect. 14 1
578 142.12 temperature 10.0 270 > th dose independent rect. 17 8
582 142.12 temperature 10.0 270 > th dose independent rect. 1 16
583 142.12 atmosphere 1015.0 270 < th dose independent rect. 1 16
591 142.20 temperature 10.0 270 > th dose dependent rect. 6 6
603 142.36 wind 9.0 270 < th dose independent rect. 17 8
634 142.94 radiation 40.0 270 < th dose independent rect. 14 2
660 143.21 atmosphere 995.0 270 > th dose independent rect. 1 16
675 143.36 precipitation 0.1 270 < th dose independent rect. 1 16
677 143.36 precipitation 0.1 270 < th dose dependent rect. 1 16
683 143.49 atmosphere 995.0 270 > th dose independent rect. 12 18
732 143.88 wind 9.0 270 < th dose independent rect. 1 16
738 143.98 atmosphere 995.0 270 > th dose independent rect. 17 8
757 144.21 wind 1.0 270 > th dose independent rect. 17 8
787 144.45 radiation 10.0 10 > th dose independent rect. 8 6
806 144.63 temperature 30.0 270 < th dose independent rect. 17 18
820 144.68 precipitation 0.1 270 < th dose independent rect. 7 15
821 144.68 precipitation 0.1 270 < th dose dependent rect. 7 15
871 145.04 temperature 10.0 10 > th dose dependent rect. 14 18
876 145.09 radiation 10.0 30 > th dose independent rect. 6 8
891 145.09 radiation 20.0 10 < th dose dependent rect. 24 19
914 145.30 precipitation 0.1 270 < th dose independent rect. 17 8
916 145.30 precipitation 0.1 270 < th dose dependent rect. 17 8
931 145.44 atmosphere 1015.0 270 < th dose independent rect. 7 15
955 145.61 atmosphere 1015.0 270 < th dose independent rect. 22 9
974 145.72 atmosphere 1015.0 270 < th dose independent rect. 17 19