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Os07g0657600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA glycosylase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0156) R2 : 0.465
β1 : 0.819 (0.0571) R2dD : 0.25 R2D : 0.0478
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.543 (0.0333) R2dN8 : 0.418 R2N8 : 0.215
σ : 0.293
deviance : 39.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.84 0.214 10.6 0.798 0.469 0.302 -0.3 0.374 0.565 23 71.02 1640 -- --
21.07 0.214 10.6 0.849 0.465 0.327 -0.284 -- 0.58 22.9 71.91 1638 -- --
21.2 0.214 10.6 0.805 0.47 0.297 -- 0.347 0.564 23.1 71 1637 -- --
21.37 0.215 10.6 0.858 0.466 0.322 -- -- 0.58 23.1 72 1628 -- --
33.14 0.27 10.6 0.84 -- 0.247 -- -0.0311 0.54 -- 72 1593 -- --
24.05 0.23 10.6 0.796 0.486 -- -0.27 -- 0.537 23.3 -- -- -- --
24.35 0.231 10.6 0.806 0.487 -- -- -- 0.538 23.4 -- -- -- --
31.87 0.264 10.6 0.842 -- 0.263 -- -- 0.551 -- 75 1588 -- --
37.42 0.285 10.6 -- 0.487 0.447 -- -- 0.6 23.4 74 8869 -- --
39.22 0.293 10.6 0.819 -- -- -- -- 0.543 -- -- -- -- --
41.49 0.301 10.7 -- 0.496 -- -- -- 0.448 23.5 -- -- -- --
45.91 0.316 10.7 -- -- 0.659 -- -- 0.421 -- 64.31 47520 -- --
56.92 0.352 10.6 -- -- -- -- -- 0.452 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.31 humidity 80.0 14400 > th dose independent rect. 14 1
2 20.34 precipitation 0.1 14400 < th dose independent rect. 16 1
3 20.34 precipitation 0.1 14400 < th dose dependent rect. 16 1
6 20.35 precipitation 0.1 14400 < th dose independent rect. 13 4
8 20.35 precipitation 0.1 14400 < th dose dependent rect. 13 4
9 20.36 precipitation 0.1 14400 > th dose independent rect. 16 1
11 20.37 precipitation 0.1 14400 > th dose independent rect. 13 4
12 20.38 humidity 80.0 14400 < th dose independent rect. 13 2
17 20.39 precipitation 0.1 14400 > th dose independent rect. 11 6
22 20.41 precipitation 0.1 14400 > th dose dependent rect. 13 4
23 20.41 precipitation 0.1 14400 > th dose dependent rect. 11 6
24 20.42 precipitation 0.1 14400 > th dose dependent rect. 16 1
28 20.44 humidity 80.0 14400 > th dose independent rect. 13 5
36 20.48 humidity 80.0 14400 > th dose independent rect. 9 9
40 20.50 precipitation 0.1 4320 > th dose independent rect. 22 19
42 20.51 precipitation 0.1 14400 < th dose independent rect. 12 16
47 20.51 precipitation 0.1 14400 < th dose dependent rect. 12 16
53 20.52 precipitation 0.1 14400 < th dose independent rect. 13 7
54 20.52 precipitation 0.1 14400 > th dose independent rect. 13 15
65 20.52 precipitation 0.1 14400 < th dose dependent rect. 13 7
71 20.53 precipitation 0.1 14400 > th dose independent rect. 13 7
77 20.53 precipitation 0.1 4320 < th dose independent rect. 22 19
78 20.53 precipitation 0.1 14400 < th dose independent rect. 9 20
81 20.53 precipitation 0.1 4320 < th dose dependent rect. 22 19
82 20.53 precipitation 0.1 14400 < th dose dependent rect. 9 20
83 20.54 humidity 80.0 14400 < th dose independent rect. 13 4
92 20.54 precipitation 0.1 14400 > th dose independent rect. 9 19
128 20.55 precipitation 0.1 14400 < th dose independent rect. 3 21
129 20.55 precipitation 0.1 14400 > th dose independent rect. 3 22
132 20.55 precipitation 0.1 14400 < th dose dependent rect. 3 21
136 20.56 precipitation 0.1 14400 < th dose independent rect. 15 5
138 20.56 precipitation 0.1 14400 < th dose independent rect. 15 13
139 20.56 precipitation 0.1 14400 > th dose independent rect. 15 14
159 20.56 precipitation 0.1 14400 < th dose dependent rect. 15 5
161 20.56 precipitation 0.1 14400 < th dose dependent rect. 15 13
173 20.57 precipitation 0.1 14400 < th dose independent sin 16 NA
175 20.57 humidity 90.0 14400 > th dose independent rect. 20 1
176 20.57 precipitation 0.1 14400 > th dose independent rect. 15 5
179 20.57 humidity 80.0 14400 < th dose independent rect. 10 8
202 20.57 precipitation 0.1 14400 > th dose independent rect. 21 23
204 20.57 precipitation 0.1 14400 < th dose independent rect. 21 23
205 20.57 precipitation 0.1 14400 < th dose dependent sin 16 NA
218 20.57 precipitation 0.1 14400 < th dose dependent rect. 21 23
219 20.58 precipitation 0.1 14400 > th dose independent sin 16 NA
295 20.60 precipitation 0.1 14400 > th dose independent rect. 13 12
318 20.60 precipitation 0.1 14400 > th dose independent rect. 15 23
325 20.60 precipitation 0.1 14400 < th dose independent rect. 15 23
327 20.60 humidity 70.0 14400 > th dose dependent rect. 13 1
337 20.60 precipitation 0.1 14400 > th dose dependent rect. 22 22
346 20.60 precipitation 0.1 14400 < th dose dependent rect. 15 23
349 20.61 precipitation 0.1 14400 > th dose independent no NA NA
350 20.61 precipitation 0.1 14400 < th dose independent no NA NA
370 20.61 precipitation 0.1 14400 < th dose dependent no NA NA
379 20.62 humidity 80.0 14400 > th dose independent rect. 10 1
406 20.62 precipitation 0.1 4320 > th dose dependent rect. 22 19
415 20.63 humidity 80.0 14400 < th dose independent rect. 10 5
565 20.67 precipitation 0.1 14400 > th dose independent rect. 3 18
566 20.67 precipitation 0.1 14400 < th dose independent rect. 3 18
579 20.67 precipitation 0.1 14400 < th dose dependent rect. 3 18
585 20.68 humidity 80.0 14400 < th dose independent rect. 10 1
586 20.68 humidity 80.0 14400 < th dose independent rect. 16 1
587 20.68 precipitation 0.1 14400 < th dose independent rect. 18 2
609 20.68 precipitation 0.1 14400 > th dose independent rect. 19 23
610 20.68 precipitation 0.1 14400 < th dose independent rect. 19 23
611 20.68 precipitation 0.1 14400 < th dose dependent rect. 18 2
621 20.68 precipitation 0.1 14400 < th dose dependent rect. 19 23
622 20.69 precipitation 0.1 14400 > th dose independent rect. 18 2
662 20.70 precipitation 0.1 14400 > th dose dependent rect. 18 1
665 20.70 precipitation 0.1 14400 > th dose dependent rect. 13 17
671 20.70 precipitation 0.1 14400 > th dose dependent rect. 18 23
672 20.71 humidity 80.0 14400 > th dose independent rect. 16 1
677 20.71 precipitation 0.1 4320 > th dose independent rect. 2 15
684 20.71 humidity 90.0 14400 < th dose dependent rect. 14 1
696 20.72 humidity 60.0 14400 > th dose independent rect. 15 5
701 20.72 humidity 60.0 14400 > th dose independent rect. 15 12
707 20.72 precipitation 0.1 4320 < th dose independent rect. 2 15
712 20.72 precipitation 0.1 4320 < th dose dependent rect. 2 15
738 20.73 precipitation 0.1 14400 > th dose dependent rect. 2 18
785 20.75 wind 9.0 14400 > th dose dependent rect. 10 1
794 20.75 precipitation 0.1 14400 > th dose dependent rect. 7 22
804 20.76 wind 9.0 14400 < th dose independent rect. 10 1
817 20.76 humidity 50.0 14400 > th dose dependent rect. 14 1
845 20.77 precipitation 0.1 14400 > th dose dependent no NA NA
855 20.77 precipitation 0.1 14400 > th dose dependent rect. 2 23
858 20.77 precipitation 0.1 14400 > th dose dependent rect. 15 23
860 20.78 temperature 30.0 43200 < th dose independent rect. 8 1
872 20.78 humidity 70.0 14400 < th dose dependent rect. 16 1
875 20.78 precipitation 0.1 14400 > th dose dependent rect. 15 15
882 20.79 temperature 30.0 43200 > th dose independent rect. 8 1
953 20.80 temperature 30.0 43200 < th dose independent rect. 19 14
968 20.80 precipitation 0.1 4320 > th dose dependent rect. 2 15
992 20.81 precipitation 0.1 14400 > th dose dependent rect. 13 7