Os07g0657300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0657300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 369.79 | 0.903 | 4.65 | 0.501 | 1.78 | 1.8 | -0.871 | 1.16 | -0.0719 | 2.62 | 75 | 1284 | -- | -- |
| 371.1 | 0.897 | 4.63 | 0.67 | 1.87 | 1.9 | -1.08 | -- | -0.0294 | 2.42 | 74 | 1222 | -- | -- |
| 370.91 | 0.897 | 4.65 | 0.512 | 1.88 | 1.89 | -- | 1.46 | -0.0438 | 2.37 | 74.33 | 1232 | -- | -- |
| 374.66 | 0.902 | 4.63 | 0.706 | 1.9 | 1.95 | -- | -- | -0.0181 | 2.2 | 74.84 | 1199 | -- | -- |
| 459.65 | 0.999 | 4.61 | 0.77 | -- | 2.14 | -- | 0.537 | 0.0645 | -- | 74.97 | 1680 | -- | -- |
| 473.67 | 1.02 | 4.68 | 0.384 | 1.47 | -- | -1.39 | -- | -0.267 | 2.9 | -- | -- | -- | -- |
| 480.04 | 1.03 | 4.68 | 0.416 | 1.47 | -- | -- | -- | -0.258 | 2.77 | -- | -- | -- | -- |
| 457.87 | 0.997 | 4.62 | 0.724 | -- | 2.47 | -- | -- | -0.0118 | -- | 75.29 | 1689 | -- | -- |
| 387.63 | 0.917 | 4.65 | -- | 1.88 | 1.9 | -- | -- | -0.105 | 2.2 | 74 | 1199 | -- | -- |
| 604.64 | 1.15 | 4.67 | 0.478 | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
| 484.59 | 1.03 | 4.69 | -- | 1.47 | -- | -- | -- | -0.304 | 2.77 | -- | -- | -- | -- |
| 471.53 | 1.01 | 4.64 | -- | -- | 2.39 | -- | -- | -0.0974 | -- | 75.87 | 1695 | -- | -- |
| 610.67 | 1.15 | 4.68 | -- | -- | -- | -- | -- | -0.274 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 358.66 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 12 | 361.47 | humidity | 70 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 15 | 362.05 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 23 | 363.09 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 31 | 363.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 53 | 365.24 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 17 |
| 68 | 366.19 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 71 | 366.34 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 76 | 366.60 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 17 |
| 80 | 366.79 | humidity | 70 | 720 | > th | dose dependent | sin | 19 | NA |
| 97 | 367.39 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 15 |
| 108 | 367.95 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 147 | 369.13 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 16 |
| 175 | 369.67 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 20 |
| 179 | 369.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 241 | 371.56 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 18 |
| 255 | 371.85 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 277 | 372.38 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 14 |
| 299 | 372.80 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 307 | 372.84 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 313 | 372.92 | humidity | 80 | 720 | > th | dose independent | sin | 21 | NA |
| 330 | 373.19 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 344 | 373.49 | humidity | 80 | 1440 | < th | dose dependent | rect. | 22 | 15 |
| 362 | 373.73 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 385 | 374.15 | humidity | 60 | 1440 | > th | dose dependent | rect. | 6 | 9 |
| 452 | 375.08 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 460 | 375.30 | radiation | 1 | 720 | < th | dose dependent | sin | 20 | NA |
| 470 | 375.42 | humidity | 70 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 502 | 375.67 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 18 |
| 559 | 376.40 | humidity | 80 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 590 | 376.74 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 607 | 376.95 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |
| 630 | 377.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 633 | 377.39 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 650 | 377.68 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 675 | 377.88 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 763 | 378.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 765 | 378.26 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 924 | 379.36 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 942 | 379.49 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 23 |