Os07g0657200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os07g0657200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.9 | 0.248 | 13.1 | 0.988 | 0.28 | 0.468 | -0.438 | 0.929 | 0.348 | 6.71 | 21.3 | 2117 | -- | -- |
| 29.64 | 0.254 | 13.1 | 0.736 | 0.266 | 0.396 | -0.493 | -- | 0.287 | 6.93 | 21.79 | 2549 | -- | -- |
| 28.3 | 0.248 | 13.1 | 1 | 0.284 | 0.457 | -- | 0.948 | 0.355 | 6.36 | 21.5 | 2094 | -- | -- |
| 30.18 | 0.256 | 13.1 | 0.811 | 0.248 | 0.337 | -- | -- | 0.276 | 6.36 | 23.6 | 2672 | -- | -- |
| 32.14 | 0.264 | 13.1 | 1.04 | -- | 0.434 | -- | 1 | 0.383 | -- | 21.4 | 1448 | -- | -- |
| 34.03 | 0.273 | 13.1 | 0.937 | 0.261 | -- | -0.56 | -- | 0.409 | 6.61 | -- | -- | -- | -- |
| 34.71 | 0.276 | 13.1 | 0.927 | 0.264 | -- | -- | -- | 0.41 | 5.99 | -- | -- | -- | -- |
| 33.01 | 0.268 | 13.1 | 0.773 | -- | 0.375 | -- | -- | 0.28 | -- | 24.1 | 2809 | -- | -- |
| 33.78 | 0.271 | 13.2 | -- | 0.26 | 0.73 | -- | -- | 0.0774 | 6.2 | 20.8 | 47520 | -- | -- |
| 38.31 | 0.289 | 13.1 | 0.935 | -- | -- | -- | -- | 0.416 | -- | -- | -- | -- | -- |
| 57.38 | 0.354 | 13.1 | -- | 0.278 | -- | -- | -- | 0.307 | 5.82 | -- | -- | -- | -- |
| 37.29 | 0.284 | 13.2 | -- | -- | 0.737 | -- | -- | 0.0797 | -- | 20.8 | 47520 | -- | -- |
| 61.38 | 0.366 | 13.1 | -- | -- | -- | -- | -- | 0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 2 | 27.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 6 | 27.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 18 | 27.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 24 | 27.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 55 | 28.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 65 | 28.02 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 72 | 28.03 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 87 | 28.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 95 | 28.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 190 | 28.10 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 199 | 28.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 200 | 28.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 12 |
| 236 | 28.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 10 |
| 244 | 28.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 319 | 28.16 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 362 | 28.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 363 | 28.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 417 | 28.20 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 450 | 28.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 498 | 28.23 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 542 | 28.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 544 | 28.25 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 601 | 28.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 606 | 28.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 672 | 28.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 849 | 28.41 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 852 | 28.41 | temperature | 20 | 270 | > th | dose dependent | sin | 14 | NA |
| 900 | 28.44 | temperature | 20 | 10 | > th | dose dependent | sin | 11 | NA |