Os07g0656700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Uncharacterized protein UPF0114 family protein.
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Os07g0656700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Uncharacterized protein UPF0114 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.51 | 0.464 | 14.1 | 0.0999 | 2.46 | -2.27 | 1.2 | -0.287 | -0.0415 | 7.78 | 25.62 | 279 | 14.2 | 4.92 |
| 97.02 | 0.459 | 14.1 | 0.14 | 2.49 | -2.31 | 1.2 | -- | -0.0291 | 7.75 | 25.71 | 281 | 14.3 | 4.62 |
| 100.1 | 0.466 | 14.2 | 0.073 | 2.43 | -2.38 | -- | -1.21 | -0.0449 | 7.79 | 25.87 | 283 | 14.3 | 4.7 |
| 100.56 | 0.467 | 14.2 | 0.2 | 2.48 | -2.32 | -- | -- | -0.0426 | 7.8 | 26.2 | 284 | 14.3 | 4.28 |
| 195.17 | 0.651 | 14.3 | 0.953 | -- | -3.57 | -- | 0.713 | 0.221 | -- | 21.19 | 326 | 13.4 | 6.83 |
| 188.93 | 0.644 | 14.2 | -0.0863 | 3.71 | -- | 1.85 | -- | -0.26 | 7.41 | -- | -- | -- | -- |
| 198.3 | 0.659 | 14.2 | -0.0442 | 3.71 | -- | -- | -- | -0.263 | 7.41 | -- | -- | -- | -- |
| 132.57 | 0.536 | 14.2 | 0.496 | -- | -4.17 | -- | -- | -0.0387 | -- | 22 | 503 | 10.8 | 8.44 |
| 101.54 | 0.469 | 14.1 | -- | 2.5 | -2.3 | -- | -- | -0.054 | 7.79 | 26.2 | 284 | 14.3 | 4.32 |
| 931.69 | 1.43 | 14.3 | 0.0155 | -- | -- | -- | -- | -0.203 | -- | -- | -- | -- | -- |
| 198.35 | 0.659 | 14.2 | -- | 3.71 | -- | -- | -- | -0.258 | 7.41 | -- | -- | -- | -- |
| 132.28 | 0.536 | 14.2 | -- | -- | -4.12 | -- | -- | -0.0146 | -- | 22.14 | 506 | 10.9 | 8.2 |
| 931.69 | 1.42 | 14.3 | -- | -- | -- | -- | -- | -0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 2 | 100.35 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 5 |
| 3 | 101.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 6 |
| 6 | 102.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 36 | 109.00 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 4 |
| 57 | 111.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 70 | 112.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 74 | 112.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 6 |
| 93 | 114.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 107 | 115.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 14 |
| 166 | 117.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 3 |
| 190 | 118.57 | temperature | 20 | 270 | > th | dose dependent | sin | 19 | NA |
| 201 | 119.01 | temperature | 30 | 270 | < th | dose independent | rect. | 19 | 20 |
| 202 | 119.02 | temperature | 30 | 270 | < th | dose dependent | sin | 20 | NA |
| 218 | 119.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 10 |
| 230 | 119.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 239 | 120.06 | temperature | 20 | 720 | > th | dose dependent | sin | 2 | NA |
| 253 | 120.35 | radiation | 1 | 270 | > th | dose independent | rect. | 15 | 14 |
| 255 | 120.38 | radiation | 1 | 270 | > th | dose independent | rect. | 15 | 4 |
| 325 | 121.74 | humidity | 90 | 270 | < th | dose independent | rect. | 15 | 4 |
| 328 | 121.76 | radiation | 1 | 270 | < th | dose dependent | sin | 14 | NA |
| 337 | 121.91 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 354 | 122.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 407 | 122.66 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 16 |
| 419 | 122.79 | radiation | 1 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 432 | 123.09 | radiation | 1 | 270 | < th | dose independent | sin | 14 | NA |
| 448 | 123.26 | radiation | 1 | 270 | > th | dose independent | sin | 14 | NA |
| 474 | 123.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 476 | 123.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 5 |
| 517 | 124.02 | humidity | 90 | 270 | < th | dose independent | rect. | 16 | 1 |
| 558 | 124.61 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 1 |
| 616 | 125.27 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 662 | 125.64 | radiation | 1 | 270 | > th | dose dependent | rect. | 16 | 14 |
| 930 | 127.81 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 7 |