Os07g0655600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os07g0655600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.51 | 0.306 | 2.97 | -0.146 | 0.17 | -0.194 | -0.59 | 0.593 | 0.0436 | 6.79 | 81 | 729 | -- | -- |
| 43.07 | 0.306 | 2.97 | -0.0957 | 0.167 | -0.187 | -0.325 | -- | 0.0511 | 6.6 | 82.05 | 748 | -- | -- |
| 43.14 | 0.306 | 2.97 | -0.143 | 0.0922 | -0.194 | -- | 0.504 | 0.0483 | 6.69 | 78.83 | 1198 | -- | -- |
| 43.32 | 0.307 | 2.97 | -0.0976 | 0.164 | -0.208 | -- | -- | 0.0485 | 7.24 | 82 | 798 | -- | -- |
| 43.53 | 0.307 | 2.97 | -0.155 | -- | -0.215 | -- | 0.613 | 0.0474 | -- | 78.15 | 1246 | -- | -- |
| 43.61 | 0.31 | 2.97 | -0.116 | 0.102 | -- | -0.408 | -- | 0.074 | 5.3 | -- | -- | -- | -- |
| 44.03 | 0.311 | 2.96 | -0.116 | 0.0995 | -- | -- | -- | 0.0759 | 5.31 | -- | -- | -- | -- |
| 43.97 | 0.309 | 2.97 | -0.0963 | -- | -0.191 | -- | -- | 0.0546 | -- | 80.71 | 1228 | -- | -- |
| 43.57 | 0.307 | 2.97 | -- | 0.165 | -0.221 | -- | -- | 0.0567 | 7.39 | 82.49 | 808 | -- | -- |
| 44.54 | 0.312 | 2.97 | -0.113 | -- | -- | -- | -- | 0.0783 | -- | -- | -- | -- | -- |
| 44.38 | 0.312 | 2.96 | -- | 0.0975 | -- | -- | -- | 0.0888 | 5.35 | -- | -- | -- | -- |
| 44.2 | 0.31 | 2.97 | -- | -- | -0.206 | -- | -- | 0.0613 | -- | 82 | 1237 | -- | -- |
| 44.88 | 0.313 | 2.96 | -- | -- | -- | -- | -- | 0.0908 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.49 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 8 |
| 3 | 39.27 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 4 |
| 7 | 39.27 | humidity | 80 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 27 | 40.14 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 3 | 1 |
| 30 | 40.33 | temperature | 20 | 10 | < th | dose independent | rect. | 4 | 1 |
| 33 | 40.43 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 3 | 1 |
| 35 | 40.45 | humidity | 80 | 720 | < th | dose dependent | rect. | 22 | 9 |
| 37 | 40.51 | humidity | 70 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 63 | 40.56 | humidity | 80 | 270 | < th | dose independent | rect. | 2 | 5 |
| 67 | 40.57 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 79 | 40.59 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 82 | 40.62 | wind | 1 | 10 | < th | dose independent | rect. | 8 | 5 |
| 83 | 40.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 5 |
| 86 | 40.62 | wind | 1 | 10 | < th | dose dependent | rect. | 8 | 5 |
| 104 | 40.69 | humidity | 90 | 720 | < th | dose dependent | rect. | 1 | 3 |
| 111 | 40.72 | humidity | 70 | 270 | < th | dose independent | rect. | 7 | 2 |
| 120 | 40.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 151 | 40.74 | humidity | 90 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 170 | 40.75 | humidity | 80 | 720 | < th | dose independent | rect. | 2 | 1 |
| 270 | 40.80 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 338 | 40.81 | humidity | 60 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 357 | 40.82 | humidity | 60 | 30 | < th | dose independent | rect. | 16 | 18 |
| 396 | 40.84 | humidity | 60 | 10 | < th | dose independent | rect. | 9 | 1 |
| 454 | 40.84 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 490 | 40.84 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 591 | 40.86 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 635 | 40.91 | humidity | 80 | 270 | < th | dose independent | rect. | 5 | 1 |
| 646 | 40.91 | humidity | 80 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 661 | 40.93 | humidity | 60 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 722 | 41.00 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 733 | 41.02 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 784 | 41.04 | humidity | 50 | 720 | > th | dose dependent | rect. | 23 | 8 |