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Os07g0655300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.0148) R2 : 0.366
β1 : 0.872 (0.0543) R2dD : 0.373 R2D : 0.316
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.164 (0.0316) R2dN8 : 0.0501 R2N8 : -0.00696
σ : 0.278
deviance : 35.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.07 0.235 13.2 0.857 0.275 0.994 -0.241 1.56 0.223 0.88 0.8322 1429 -- --
26.47 0.24 13.1 1.04 0.269 0.771 -0.283 -- 0.289 0.741 0.9606 1417 -- --
25.25 0.234 13.2 0.871 0.279 1 -- 1.56 0.225 0.737 0.8385 1417 -- --
26.63 0.24 13.2 1.04 0.285 0.678 -- -- 0.256 0.752 1.021 1410 -- --
27.71 0.245 13.2 0.902 -- 1.13 -- 1.53 0.232 -- 0.8599 1504 -- --
31.27 0.262 13.2 0.849 0.238 -- -0.368 -- 0.158 0.848 -- -- -- --
31.84 0.264 13.2 0.863 0.24 -- -- -- 0.159 0.963 -- -- -- --
27.49 0.244 13.2 0.954 -- 0.726 -- -- 0.229 -- 2.008 1632 -- --
47.19 0.32 13.2 -- 0.261 0.403 -- -- 0.226 0.374 10 8599 -- --
35.41 0.278 13.2 0.872 -- -- -- -- 0.164 -- -- -- -- --
51.46 0.336 13.2 -- 0.254 -- -- -- 0.0633 1.11 -- -- -- --
49.33 0.327 13.2 -- -- 0.464 -- -- 0.236 -- 10.03 7543 -- --
55.46 0.348 13.2 -- -- -- -- -- 0.0673 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.97 precipitation 0.1 43200 > th dose dependent rect. 19 1
2 24.03 humidity 80.0 14400 > th dose independent rect. 14 5
6 24.15 humidity 80.0 14400 > th dose independent rect. 17 1
7 24.16 humidity 80.0 14400 < th dose independent rect. 16 2
9 24.19 humidity 80.0 14400 < th dose independent rect. 14 5
20 24.31 precipitation 0.1 43200 > th dose independent rect. 19 1
29 24.40 precipitation 0.1 43200 < th dose independent rect. 19 1
30 24.40 precipitation 0.1 43200 < th dose dependent rect. 19 1
58 24.71 humidity 80.0 14400 > th dose independent rect. 14 1
72 24.81 radiation 1.0 14400 < th dose independent rect. 18 11
75 24.83 radiation 1.0 14400 < th dose independent rect. 18 2
86 24.84 humidity 70.0 14400 > th dose dependent rect. 13 2
98 24.91 humidity 80.0 14400 > th dose independent sin 20 NA
103 24.92 humidity 80.0 14400 > th dose dependent rect. 18 1
104 24.92 humidity 70.0 14400 > th dose dependent rect. 13 6
108 24.94 precipitation 0.1 14400 < th dose independent rect. 13 1
111 24.94 precipitation 0.1 14400 < th dose dependent rect. 13 1
126 24.98 precipitation 0.1 14400 > th dose dependent rect. 13 1
148 25.03 precipitation 0.1 14400 > th dose independent rect. 13 1
155 25.04 radiation 1.0 14400 > th dose independent rect. 18 1
169 25.04 wind 3.0 43200 < th dose dependent rect. 24 4
179 25.07 humidity 80.0 14400 < th dose independent sin 21 NA
190 25.07 radiation 1.0 1440 < th dose dependent rect. 7 22
205 25.10 radiation 1.0 1440 < th dose dependent rect. 16 13
206 25.10 radiation 1.0 1440 < th dose dependent rect. 14 18
212 25.11 radiation 1.0 1440 < th dose dependent rect. 17 3
215 25.11 radiation 1.0 1440 < th dose dependent rect. 17 9
216 25.11 radiation 1.0 1440 < th dose dependent rect. 7 13
238 25.12 radiation 1.0 1440 < th dose dependent rect. 7 18
252 25.13 radiation 1.0 1440 < th dose dependent sin 14 NA
277 25.15 humidity 90.0 43200 < th dose independent rect. 20 1
307 25.20 humidity 90.0 43200 < th dose independent rect. 19 3
333 25.23 humidity 80.0 43200 > th dose independent rect. 5 2
334 25.23 precipitation 0.1 14400 > th dose independent rect. 13 11
335 25.23 precipitation 0.1 14400 < th dose independent rect. 13 11
342 25.23 precipitation 0.1 14400 < th dose dependent rect. 13 11
355 25.24 radiation 1.0 1440 < th dose dependent rect. 3 17
360 25.25 precipitation 0.1 14400 > th dose independent rect. 16 8
361 25.25 precipitation 0.1 14400 < th dose independent rect. 16 8
369 25.25 precipitation 0.1 14400 < th dose dependent rect. 16 8
371 25.25 radiation 1.0 1440 < th dose dependent rect. 4 15
377 25.25 radiation 1.0 1440 < th dose dependent rect. 1 19
393 25.26 humidity 90.0 14400 > th dose independent rect. 18 8
395 25.26 radiation 1.0 1440 < th dose dependent no NA NA
441 25.28 humidity 90.0 14400 > th dose independent rect. 19 5
462 25.29 precipitation 0.1 43200 < th dose independent rect. 17 1
473 25.29 precipitation 0.1 43200 < th dose dependent rect. 17 1
477 25.29 humidity 90.0 14400 > th dose dependent rect. 19 7
486 25.30 wind 9.0 43200 > th dose independent rect. 19 2
496 25.31 precipitation 0.1 43200 > th dose independent rect. 17 1
537 25.34 humidity 80.0 43200 < th dose independent rect. 5 3
574 25.36 wind 9.0 43200 > th dose dependent rect. 19 2
617 25.39 humidity 80.0 43200 < th dose independent rect. 6 1
641 25.40 radiation 1.0 1440 < th dose dependent sin 23 NA
647 25.40 humidity 90.0 720 > th dose dependent rect. 6 16
652 25.41 humidity 70.0 1440 > th dose dependent rect. 18 1
662 25.42 wind 1.0 43200 < th dose independent rect. 5 1
693 25.44 humidity 80.0 14400 > th dose dependent sin 18 NA
700 25.45 wind 9.0 43200 < th dose independent rect. 19 2
737 25.46 precipitation 0.1 43200 > th dose dependent rect. 17 3
791 25.48 wind 9.0 43200 > th dose dependent rect. 19 6
817 25.50 precipitation 0.1 14400 > th dose independent sin 17 NA
818 25.50 precipitation 0.1 14400 < th dose independent sin 17 NA
826 25.50 precipitation 0.1 14400 < th dose dependent sin 17 NA
830 25.51 precipitation 0.1 14400 > th dose independent rect. 18 4
831 25.51 precipitation 0.1 14400 < th dose independent rect. 18 4
840 25.51 humidity 80.0 1440 > th dose dependent rect. 18 3
842 25.51 precipitation 0.1 14400 < th dose dependent rect. 18 4
844 25.51 wind 3.0 43200 < th dose dependent rect. 24 9
862 25.52 wind 9.0 43200 > th dose dependent rect. 19 8
912 25.54 wind 3.0 43200 < th dose dependent rect. 24 12
928 25.55 radiation 1.0 14400 < th dose dependent rect. 18 8
930 25.55 radiation 1.0 14400 < th dose dependent rect. 18 10
943 25.56 radiation 40.0 4320 < th dose dependent rect. 18 2
947 25.56 radiation 1.0 14400 < th dose dependent rect. 18 6
970 25.57 radiation 1.0 14400 < th dose dependent rect. 18 2
977 25.57 precipitation 0.1 43200 > th dose dependent rect. 14 5