Os07g0654800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0654800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, putative npRNA.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 283.11 | 0.791 | 3.85 | -0.791 | 0.184 | 1.07 | -1.12 | -1.63 | 0.0832 | 17.1 | 86.05 | 1309 | -- | -- |
| 286.66 | 0.789 | 3.84 | -0.64 | 0.182 | 0.98 | -1.01 | -- | 0.097 | 16.9 | 87.3 | 1308 | -- | -- |
| 285.9 | 0.788 | 3.86 | -0.797 | 0.184 | 1.05 | -- | -1.45 | 0.0771 | 18.8 | 86.08 | 1360 | -- | -- |
| 288.89 | 0.792 | 3.84 | -0.637 | 0.179 | 0.934 | -- | -- | 0.106 | 18.7 | 86.18 | 1359 | -- | -- |
| 287.49 | 0.79 | 3.85 | -0.776 | -- | 1.03 | -- | -1.49 | 0.073 | -- | 86 | 1402 | -- | -- |
| 307.33 | 0.822 | 3.83 | -0.521 | 0.0944 | -- | -1.11 | -- | 0.102 | 17.3 | -- | -- | -- | -- |
| 309.4 | 0.824 | 3.84 | -0.523 | 0.158 | -- | -- | -- | 0.0962 | 20.9 | -- | -- | -- | -- |
| 290.5 | 0.794 | 3.83 | -0.637 | -- | 0.912 | -- | -- | 0.105 | -- | 86 | 1420 | -- | -- |
| 298.41 | 0.805 | 3.83 | -- | 0.183 | 0.893 | -- | -- | 0.126 | 18.6 | 100.1 | 1359 | -- | -- |
| 310.82 | 0.824 | 3.84 | -0.523 | -- | -- | -- | -- | 0.0951 | -- | -- | -- | -- | -- |
| 316.59 | 0.832 | 3.83 | -- | 0.159 | -- | -- | -- | 0.154 | 20.6 | -- | -- | -- | -- |
| 300.12 | 0.807 | 3.83 | -- | -- | 0.865 | -- | -- | 0.124 | -- | 107.4 | 1393 | -- | -- |
| 318.02 | 0.832 | 3.82 | -- | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 272.43 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 3 | 273.23 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 7 | 273.35 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 10 | 273.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 12 | 273.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 13 | 273.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 16 | 273.54 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 30 | 274.22 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 36 | 274.60 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 39 | 274.64 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 52 | 274.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 55 | 274.74 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 65 | 275.22 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 93 | 275.77 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 16 | 17 |
| 95 | 275.79 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 115 | 275.84 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 126 | 275.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 133 | 276.09 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 9 |
| 146 | 276.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 147 | 276.43 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 148 | 276.43 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 5 |
| 163 | 276.58 | wind | 9.0 | 90 | > th | dose independent | rect. | 19 | 15 |
| 180 | 276.86 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 185 | 277.01 | wind | 9.0 | 90 | > th | dose independent | rect. | 21 | 13 |
| 222 | 277.37 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 15 |
| 230 | 277.58 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 238 | 277.73 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 254 | 277.88 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 261 | 278.00 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 262 | 278.01 | wind | 9.0 | 90 | > th | dose independent | rect. | 1 | 9 |
| 276 | 278.23 | temperature | 30.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 328 | 278.72 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 375 | 279.00 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 390 | 279.08 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 422 | 279.25 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 509 | 279.72 | humidity | 60.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 562 | 279.84 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 9 |
| 597 | 279.95 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 603 | 279.98 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 615 | 280.09 | humidity | 60.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 651 | 280.39 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 659 | 280.41 | temperature | 20.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 669 | 280.45 | temperature | 10.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 678 | 280.51 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 686 | 280.56 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 706 | 280.64 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 718 | 280.72 | wind | 7.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 720 | 280.72 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 721 | 280.72 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 3 |
| 743 | 280.80 | wind | 7.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 747 | 280.81 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 754 | 280.84 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 792 | 280.98 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 10 | 7 |
| 809 | 280.98 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 939 | 281.28 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 941 | 281.29 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 6 |
| 973 | 281.35 | wind | 7.0 | 90 | > th | dose dependent | rect. | 23 | 11 |
| 992 | 281.45 | wind | 9.0 | 90 | > th | dose dependent | rect. | 19 | 15 |