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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0654500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0475) R2 : 0.185
β1 : 1.47 (0.18) R2dD : 0.179 R2D : -0.111
β2 : -- (--) R2dC : -- R2C : --
β3 : -8.9 (0.979) R2dE : 2.46 R2E : -2.53
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -43.2 (4.67) R2dD*E : 2.56 R2D*E : -2.28
γ1 : -0.0477 (0.0886) R2dN8 : 0.000712 R2N8 : -0.0688
σ : 0.767
deviance : 270.92
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 6.998
memory length : 1440
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22
open length of G : 11

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
269.18 0.771 3.14 1.49 0.116 -9.14 0.866 -44.3 -0.0482 5.34 7 1441 22 11
320.75 0.841 2.91 0.558 0.0143 -0.0374 -0.538 -- -0.0754 21.9 7 1441 22 11
270.31 0.766 3.14 1.49 0.103 -9.08 -- -44.1 -0.0499 3.43 6.999 1440 22 11
321.25 0.84 2.91 0.576 0.283 -0.229 -- -- -0.0562 2.8 8.871 27378 20.9 12.1
270.92 0.767 3.13 1.47 -- -8.9 -- -43.2 -0.0477 -- 6.998 1440 22 11
320.9 0.84 2.92 0.556 0.00682 -- -0.542 -- -0.0798 21.8 -- -- -- --
322.01 0.84 2.92 0.578 0.0221 -- -- -- -0.0783 17.8 -- -- -- --
319.12 0.832 2.93 0.874 -- -0.409 -- -- -0.056 -- 1.865 47520 17 17.5
328.62 0.844 2.91 -- 0.0804 0.24 -- -- -0.127 2.72 11.88 47520 21.1 12.4
322.04 0.839 2.91 0.577 -- -- -- -- -0.0788 -- -- -- -- --
330.82 0.851 2.93 -- 0.0149 -- -- -- -0.143 19.7 -- -- -- --
325.96 0.841 2.95 -- -- 0.335 -- -- -0.22 -- 7.704 47520 21.1 15.6
330.83 0.849 2.93 -- -- -- -- -- -0.143 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 273.28 wind 7 1440 < th dose independent rect. 22 11
2 273.84 wind 7 1440 > th dose independent rect. 23 10
4 273.92 humidity 80 10 < th dose independent rect. 22 9
12 275.47 wind 5 1440 > th dose dependent rect. 21 13
14 275.62 wind 5 1440 > th dose independent rect. 21 13
17 276.71 wind 5 1440 < th dose independent rect. 20 14
19 276.88 humidity 80 30 < th dose dependent rect. 22 9
34 279.04 humidity 50 30 < th dose independent rect. 13 5
95 279.44 humidity 50 10 < th dose independent sin 12 NA
101 279.58 humidity 50 30 < th dose dependent rect. 13 5
123 279.80 humidity 50 10 > th dose independent sin 12 NA
125 279.84 humidity 50 10 < th dose dependent sin 12 NA
127 279.90 humidity 50 270 < th dose independent rect. 11 2
147 279.99 humidity 50 270 < th dose dependent rect. 11 2
170 280.42 wind 5 1440 > th dose independent sin 9 NA
218 280.89 wind 5 1440 < th dose independent sin 9 NA
258 282.00 humidity 50 90 < th dose dependent sin 7 NA
355 283.20 wind 5 1440 < th dose independent rect. 20 18
363 283.52 wind 5 1440 > th dose independent rect. 20 18
380 284.34 wind 7 1440 < th dose independent rect. 8 1
382 284.42 humidity 80 720 < th dose independent rect. 24 1
384 284.42 humidity 80 720 < th dose dependent rect. 24 1
395 284.74 wind 7 1440 > th dose independent rect. 8 1
409 285.12 wind 7 1440 < th dose independent rect. 4 5
493 286.68 wind 5 1440 < th dose independent rect. 17 11
494 286.75 wind 5 1440 < th dose independent rect. 22 1
523 287.07 wind 3 1440 > th dose dependent sin 10 NA
529 287.16 wind 5 1440 > th dose independent rect. 22 1
538 287.29 wind 5 1440 > th dose independent rect. 17 11
567 287.45 humidity 80 30 < th dose dependent rect. 4 2
569 287.47 humidity 80 30 < th dose independent rect. 4 2
592 287.67 wind 5 1440 < th dose independent rect. 21 4
626 287.95 wind 5 1440 > th dose independent rect. 21 3
628 287.97 wind 5 1440 < th dose independent rect. 19 9
657 288.27 temperature 20 720 < th dose independent rect. 18 1
672 288.50 wind 5 1440 > th dose independent rect. 19 9
710 289.20 humidity 80 10 < th dose independent rect. 22 12
722 289.32 radiation 20 1440 > th dose independent rect. 6 1
737 289.32 wind 3 1440 > th dose dependent rect. 21 4
754 289.59 wind 5 1440 > th dose dependent rect. 22 1
767 289.82 wind 3 1440 > th dose dependent rect. 17 11
768 289.83 wind 7 90 > th dose independent rect. 1 8
769 289.84 humidity 80 90 < th dose independent rect. 23 2
773 289.85 humidity 80 90 < th dose dependent rect. 23 2
774 289.85 wind 7 90 > th dose dependent rect. 1 8
782 289.90 humidity 80 10 < th dose independent rect. 24 2
790 289.90 humidity 80 10 < th dose dependent rect. 24 2
823 289.97 wind 3 1440 > th dose dependent rect. 21 7
824 289.98 wind 7 90 > th dose independent rect. 7 2
827 289.99 wind 7 90 > th dose dependent rect. 7 2
958 290.63 humidity 80 270 < th dose independent sin 10 NA
960 290.64 wind 3 1440 > th dose independent rect. 24 1
961 290.65 humidity 80 90 < th dose independent rect. 12 22
965 290.69 humidity 50 90 > th dose independent sin 15 NA
986 290.92 wind 3 1440 > th dose dependent rect. 20 18