Os07g0654300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0654300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.75 | 0.3 | 8.61 | -0.271 | 0.219 | 0.629 | 0.668 | -1.67 | -0.118 | 5.72 | 8.78 | 854 | -- | -- |
| 42.96 | 0.305 | 8.62 | -0.243 | 0.224 | 0.591 | -0.4 | -- | -0.139 | 5.69 | 8.938 | 854 | -- | -- |
| 41.22 | 0.299 | 8.61 | -0.271 | 0.228 | 0.617 | -- | -1.06 | -0.116 | 5.77 | 8.868 | 858 | -- | -- |
| 43.22 | 0.306 | 8.61 | -0.273 | 0.254 | 0.592 | -- | -- | -0.121 | 5.72 | 9.45 | 865 | -- | -- |
| 41.65 | 0.301 | 8.61 | -0.271 | -- | 0.876 | -- | -1.04 | -0.118 | -- | 7.318 | 806 | -- | -- |
| 45.93 | 0.318 | 8.6 | -0.242 | 0.66 | -- | -0.495 | -- | -0.159 | 6.58 | -- | -- | -- | -- |
| 46.54 | 0.319 | 8.6 | -0.249 | 0.659 | -- | -- | -- | -0.158 | 6.53 | -- | -- | -- | -- |
| 43.5 | 0.307 | 8.61 | -0.271 | -- | 0.861 | -- | -- | -0.113 | -- | 7.28 | 799 | -- | -- |
| 45.16 | 0.313 | 8.6 | -- | 0.22 | 0.61 | -- | -- | -0.103 | 5.74 | 7.31 | 863 | -- | -- |
| 69.13 | 0.389 | 8.62 | -0.233 | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
| 48.18 | 0.325 | 8.6 | -- | 0.656 | -- | -- | -- | -0.13 | 6.55 | -- | -- | -- | -- |
| 45.17 | 0.313 | 8.6 | -- | -- | 0.871 | -- | -- | -0.0917 | -- | 6.11 | 806 | -- | -- |
| 70.56 | 0.392 | 8.61 | -- | -- | -- | -- | -- | -0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.24 | radiation | 10.0 | 720 | < th | dose independent | rect. | 24 | 21 |
| 2 | 40.42 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 16 |
| 26 | 40.72 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 38 | 40.77 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 2 | NA |
| 44 | 40.83 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 46 | 40.84 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 15 |
| 49 | 40.86 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 53 | 40.87 | radiation | 10.0 | 270 | < th | dose independent | rect. | 8 | 22 |
| 55 | 40.87 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 63 | 40.89 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 12 |
| 74 | 40.93 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 19 |
| 77 | 40.94 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 17 |
| 90 | 40.98 | radiation | 20.0 | 720 | < th | dose independent | rect. | 10 | 3 |
| 100 | 41.00 | humidity | 90.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 103 | 41.00 | radiation | 20.0 | 720 | < th | dose independent | rect. | 16 | 21 |
| 113 | 41.02 | radiation | 20.0 | 720 | < th | dose independent | rect. | 11 | 1 |
| 116 | 41.02 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 132 | 41.06 | radiation | 10.0 | 720 | < th | dose independent | rect. | 8 | 13 |
| 139 | 41.07 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 142 | 41.07 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 153 | 41.09 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 168 | 41.13 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 190 | 41.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 202 | 41.19 | radiation | 10.0 | 720 | < th | dose independent | sin | 1 | NA |
| 224 | 41.23 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 232 | 41.25 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 239 | 41.26 | radiation | 10.0 | 720 | < th | dose independent | sin | 13 | NA |
| 250 | 41.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 259 | 41.29 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 20 |
| 269 | 41.30 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 290 | 41.32 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 320 | 41.36 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 321 | 41.36 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 322 | 41.36 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 324 | 41.36 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 333 | 41.36 | radiation | 10.0 | 720 | < th | dose independent | rect. | 18 | 22 |
| 335 | 41.36 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 338 | 41.36 | radiation | 30.0 | 720 | < th | dose dependent | rect. | 11 | 1 |
| 348 | 41.37 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 356 | 41.37 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 11 | 22 |
| 358 | 41.38 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 374 | 41.39 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 375 | 41.39 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 390 | 41.39 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 411 | 41.40 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 416 | 41.41 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 418 | 41.41 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 430 | 41.41 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 436 | 41.41 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 438 | 41.41 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 454 | 41.42 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 487 | 41.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 498 | 41.45 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 17 |
| 504 | 41.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 510 | 41.45 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 513 | 41.46 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 579 | 41.48 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 590 | 41.49 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 603 | 41.50 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 611 | 41.50 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 624 | 41.50 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 635 | 41.51 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 650 | 41.52 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 654 | 41.52 | radiation | 20.0 | 720 | < th | dose independent | rect. | 24 | 13 |
| 675 | 41.53 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 676 | 41.53 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 704 | 41.54 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 716 | 41.54 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 8 | 5 |
| 746 | 41.56 | humidity | 90.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 747 | 41.56 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 776 | 41.57 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 805 | 41.58 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 10 |
| 840 | 41.59 | wind | 7.0 | 30 | < th | dose independent | rect. | 6 | 23 |
| 893 | 41.61 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 20 |
| 944 | 41.64 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 945 | 41.64 | wind | 3.0 | 1440 | < th | dose independent | rect. | 8 | 1 |