Os07g0653000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0653000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.42 | 0.371 | 10.9 | -0.911 | 0.89 | -0.0446 | 0.125 | -5.13 | -0.0177 | 5.1 | 26.06 | 4031 | -- | -- |
| 67.98 | 0.384 | 10.8 | 0.102 | 0.836 | -0.528 | -0.0267 | -- | 0.0616 | 5.32 | 27.01 | 4662 | -- | -- |
| 62.45 | 0.368 | 10.9 | -0.913 | 0.889 | -0.0412 | -- | -5.18 | -0.02 | 5.09 | 26.14 | 4000 | -- | -- |
| 66.69 | 0.38 | 10.8 | 0.203 | 0.835 | -0.553 | -- | -- | 0.168 | 5.11 | 27.2 | 4660 | -- | -- |
| 91.61 | 0.448 | 10.8 | 0.136 | -- | -1.01 | -- | -0.632 | 0.233 | -- | 26 | 4812 | -- | -- |
| 78.57 | 0.416 | 10.8 | 0.0348 | 0.846 | -- | 0.00302 | -- | 0.193 | 5.27 | -- | -- | -- | -- |
| 78.57 | 0.415 | 10.8 | 0.0348 | 0.846 | -- | -- | -- | 0.193 | 5.27 | -- | -- | -- | -- |
| 91.74 | 0.448 | 10.8 | 0.197 | -- | -1.05 | -- | -- | 0.248 | -- | 26 | 4812 | -- | -- |
| 64.5 | 0.374 | 10.7 | -- | 0.935 | -0.514 | -- | -- | 0.379 | 5.28 | 27.8 | 13045 | -- | -- |
| 115.96 | 0.503 | 10.8 | 0.0641 | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
| 78.6 | 0.415 | 10.8 | -- | 0.847 | -- | -- | -- | 0.189 | 5.26 | -- | -- | -- | -- |
| 92.75 | 0.45 | 10.8 | -- | -- | -1.02 | -- | -- | 0.225 | -- | 26 | 4812 | -- | -- |
| 116.07 | 0.503 | 10.8 | -- | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.54 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 2 | 57.96 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 3 | 58.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 5 | 58.17 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 6 | 58.18 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 7 | 58.19 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 9 | 58.25 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 12 | 58.29 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 13 | 58.29 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 15 | 58.29 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 23 | 58.29 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 41 | 58.32 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 55 | 58.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 56 | 58.34 | temperature | 30.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 71 | 58.34 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 5 |
| 86 | 58.35 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 88 | 58.35 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 92 | 58.37 | temperature | 30.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 100 | 58.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 142 | 58.44 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 148 | 58.46 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 152 | 58.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 153 | 58.47 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 155 | 58.47 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 163 | 58.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 164 | 58.48 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 167 | 58.48 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 10 |
| 169 | 58.49 | wind | 3.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 233 | 58.56 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 240 | 58.56 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 247 | 58.57 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 259 | 58.57 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 8 |
| 271 | 58.60 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 288 | 58.62 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 289 | 58.62 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 294 | 58.63 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 336 | 58.73 | wind | 3.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 512 | 58.99 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 527 | 59.00 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 550 | 59.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 556 | 59.02 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 558 | 59.02 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 607 | 59.09 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 629 | 59.10 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 696 | 59.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 12 |
| 714 | 59.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 12 |
| 748 | 59.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 12 |
| 786 | 59.28 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 797 | 59.30 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 798 | 59.30 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 7 | 15 |
| 800 | 59.30 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 828 | 59.30 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 831 | 59.31 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 834 | 59.31 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 902 | 59.31 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 8 |
| 904 | 59.32 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 907 | 59.32 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 8 |