Os07g0652800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0652800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.18 | 0.415 | 3.47 | 0.315 | 0.145 | -0.623 | -0.469 | -1.3 | 0.146 | 6.15 | 0.8733 | 4276 | -- | -- |
| 80.49 | 0.418 | 3.47 | 0.575 | 0.142 | -0.457 | -0.517 | -- | 0.145 | 5.75 | 0.873 | 4267 | -- | -- |
| 78.54 | 0.413 | 3.48 | 0.314 | 0.151 | -0.669 | -- | -1.41 | 0.156 | 6.14 | 0.71 | 4295 | -- | -- |
| 80.11 | 0.417 | 3.45 | 0.599 | 0.141 | -0.526 | -- | -- | 0.2 | 6.04 | 1.23 | 5717 | -- | -- |
| 79.62 | 0.416 | 3.48 | 0.329 | -- | -0.663 | -- | -1.36 | 0.156 | -- | 0.71 | 4271 | -- | -- |
| 85.13 | 0.433 | 3.47 | 0.46 | 0.155 | -- | -0.394 | -- | 0.0967 | 6.84 | -- | -- | -- | -- |
| 85.41 | 0.433 | 3.47 | 0.455 | 0.158 | -- | -- | -- | 0.0986 | 7.92 | -- | -- | -- | -- |
| 78.64 | 0.413 | 3.43 | 0.627 | -- | -0.614 | -- | -- | 0.218 | -- | 1.53 | 13935 | -- | -- |
| 85.8 | 0.431 | 3.46 | -- | 0.0453 | -0.536 | -- | -- | 0.16 | 5.93 | 4.82 | 9559 | -- | -- |
| 86.77 | 0.435 | 3.47 | 0.457 | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
| 90.87 | 0.446 | 3.48 | -- | 0.161 | -- | -- | -- | 0.0479 | 7.72 | -- | -- | -- | -- |
| 85.85 | 0.432 | 3.45 | -- | -- | -0.523 | -- | -- | 0.173 | -- | 4.83 | 9540 | -- | -- |
| 92.28 | 0.448 | 3.48 | -- | -- | -- | -- | -- | 0.05 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.34 | humidity | 80.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 3 | 73.79 | radiation | 10.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 30 | 75.91 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 31 | 75.93 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 38 | 76.13 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 39 | 76.14 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 42 | 76.25 | temperature | 25.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 53 | 76.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 54 | 76.58 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 55 | 76.58 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 65 | 76.58 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 66 | 76.59 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 68 | 76.59 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 113 | 76.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 2 |
| 114 | 76.68 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 115 | 76.68 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 121 | 76.71 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 124 | 76.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 210 | 76.86 | radiation | 1.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 252 | 76.87 | radiation | 1.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 386 | 76.95 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 397 | 76.95 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 413 | 76.99 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 12 |
| 464 | 77.04 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 468 | 77.05 | wind | 7.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 473 | 77.05 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 478 | 77.06 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 504 | 77.08 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 508 | 77.09 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 515 | 77.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 522 | 77.10 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 538 | 77.11 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 15 |
| 539 | 77.12 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 554 | 77.13 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 568 | 77.15 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 570 | 77.15 | wind | 7.0 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 576 | 77.16 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 593 | 77.17 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 596 | 77.17 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 602 | 77.18 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 611 | 77.19 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 612 | 77.19 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 14 |
| 618 | 77.19 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 621 | 77.20 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 629 | 77.20 | wind | 7.0 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 650 | 77.21 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 664 | 77.21 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 667 | 77.21 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 681 | 77.21 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 689 | 77.22 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 722 | 77.22 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 735 | 77.23 | temperature | 20.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 763 | 77.24 | temperature | 20.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 827 | 77.25 | wind | 7.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 876 | 77.26 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 902 | 77.26 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 944 | 77.27 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 15 | 9 |