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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0650300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0218) R2 : 0.3
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.76 (0.413) R2dE : 0.299 R2E : 0.296
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0624 (0.046) R2dN8 : 0.00365 R2N8 : 0.00137
σ : 0.41
deviance : 77.5
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_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.02842
memory length : 7
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.83
open length of G : 0.103

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.48 0.407 2.85 -0.0256 0.0186 9 0.452 -30.7 0.0713 9.61 0.1 90 1 2
138.73 0.549 2.85 0.0621 0.423 5.92 -0.271 -- 0.212 18.8 0.01951 113 1.04 1.3
77.18 0.409 2.85 0.00414 0.0398 9.07 -- -30.9 0.0722 14.6 0.1113 97 0.979 1.98
84.58 0.428 2.84 0.0324 0.0446 3.13 -- -- 0.0134 16.9 0.1353 8 1.85 0.0975
77.27 0.409 2.85 0.00777 -- 9.06 -- -31 0.0724 -- 0.1099 97 0.978 1.97
108.69 0.489 2.84 -0.0413 0.0071 -- -0.65 -- 0.0416 23.9 -- -- -- --
110.52 0.492 2.84 -0.0156 0.0111 -- -- -- 0.0443 1.9 -- -- -- --
77.35 0.41 2.84 0.0479 -- 5.79 -- -- 0.0728 -- 0.0242 6 1.83 0.103
79.15 0.414 2.81 -- 0.0111 4.58 -- -- 0.0576 17.4 4.834e-07 5 1.83 0.117
110.53 0.491 2.84 -0.0151 -- -- -- -- 0.0446 -- -- -- -- --
110.53 0.492 2.84 -- 0.0108 -- -- -- 0.046 1.86 -- -- -- --
77.5 0.41 2.84 -- -- 5.76 -- -- 0.0624 -- 0.02842 7 1.83 0.103
110.54 0.491 2.84 -- -- -- -- -- 0.0462 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.48 precipitation 0.1 90 > th dose independent rect. 1 2
2 76.48 precipitation 0.1 90 > th dose dependent rect. 1 2
3 76.49 precipitation 0.1 10 > th dose independent rect. 1 1
14 76.49 precipitation 0.1 10 > th dose dependent rect. 1 1
117 85.37 temperature 20.0 10 < th dose dependent rect. 2 1
132 87.52 wind 3.0 10 > th dose independent rect. 2 1
168 90.85 temperature 20.0 720 < th dose independent rect. 15 1
174 91.89 wind 9.0 10 > th dose independent rect. 15 1
184 91.89 wind 9.0 10 > th dose dependent rect. 15 1
195 93.00 precipitation 0.1 10 < th dose independent sin 13 NA
196 93.00 precipitation 0.1 10 < th dose dependent sin 13 NA
199 93.11 precipitation 0.1 10 > th dose independent sin 13 NA
204 93.21 temperature 20.0 90 < th dose independent rect. 1 1
223 93.55 precipitation 0.1 10 > th dose dependent sin 12 NA
235 93.91 atmosphere 1005.0 10 < th dose independent rect. 24 2
268 94.04 precipitation 0.1 10 > th dose dependent rect. 1 7
328 94.32 humidity 90.0 90 > th dose independent rect. 24 1
437 95.16 temperature 20.0 720 < th dose dependent rect. 15 1
457 95.96 humidity 90.0 90 > th dose dependent rect. 24 1
548 96.86 humidity 90.0 10 > th dose dependent rect. 1 1
637 97.46 precipitation 0.1 10 > th dose independent no NA NA
638 97.46 precipitation 0.1 10 < th dose independent no NA NA
689 97.46 precipitation 0.1 10 < th dose dependent no NA NA
723 97.60 precipitation 0.1 10 > th dose dependent no NA NA
807 98.73 wind 7.0 270 > th dose dependent rect. 12 1
887 100.63 temperature 20.0 30 < th dose dependent rect. 1 7
929 101.06 temperature 15.0 1440 < th dose independent rect. 2 1