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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0650000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0256) R2 : 0.306
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.71 (0.403) R2dE : 0.306 R2E : 0.306
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00146 (0.054) R2dN8 : 1.29e-06 R2N8 : 4.47e-05
σ : 0.481
deviance : 106.82
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.5328
memory length : 29
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22.2
open length of G : 1.55

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.63 0.485 3.2 -0.101 0.182 8.34 -0.147 -18 -0.00505 1.42 0.6491 34 22.6 1.15
108.63 0.485 3.14 0.135 0.246 6.74 0.281 -- 0.013 0.917 0.539 29 22 1.7
106.7 0.481 3.2 -0.0934 0.187 8.33 -- -18 -0.00717 1.22 0.6335 33 22.6 1.15
105.4 0.478 3.14 0.0555 0.173 6.03 -- -- 0.0157 0.522 0.5224 29 22.2 1.42
108.74 0.486 3.2 -0.0881 -- 8.19 -- -17.5 0.00027 -- 0.649 33 22.6 1.15
149.44 0.573 3.17 -0.0271 0.257 -- -0.23 -- -0.0372 0.984 -- -- -- --
149.66 0.573 3.17 -0.0185 0.257 -- -- -- -0.0358 0.827 -- -- -- --
106.82 0.481 3.16 0.0105 -- 5.72 -- -- 0.00041 -- 0.5294 29 22.2 1.57
104.86 0.477 3.17 -- 0.18 5.61 -- -- -0.00577 1.25 0.5176 29 22.3 1.4
153.79 0.579 3.17 -0.00911 -- -- -- -- -0.031 -- -- -- -- --
149.67 0.572 3.17 -- 0.257 -- -- -- -0.0337 0.824 -- -- -- --
106.82 0.481 3.16 -- -- 5.71 -- -- -0.00146 -- 0.5328 29 22.2 1.55
153.79 0.579 3.17 -- -- -- -- -- -0.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 125.63 atmosphere 1000 10 < th dose independent rect. 23 1
14 126.85 wind 1 30 < th dose dependent rect. 23 1
32 130.09 atmosphere 1000 10 < th dose dependent rect. 24 1
42 131.42 wind 1 30 < th dose dependent rect. 14 10
48 132.45 wind 1 270 < th dose dependent rect. 20 3
49 132.53 wind 1 270 < th dose independent rect. 21 2
62 134.65 wind 1 30 < th dose dependent rect. 12 12
85 135.46 temperature 25 10 > th dose dependent rect. 21 3
370 141.45 humidity 60 270 < th dose independent rect. 18 1
374 141.49 humidity 60 270 < th dose dependent rect. 18 1
383 141.60 atmosphere 1000 90 < th dose independent rect. 22 9
422 141.88 humidity 70 270 < th dose dependent rect. 19 12
423 141.89 humidity 80 270 < th dose dependent rect. 20 1
517 142.28 temperature 25 270 > th dose independent rect. 20 1
552 142.60 atmosphere 1000 90 < th dose independent rect. 22 13
680 143.07 atmosphere 1000 90 > th dose independent sin 12 NA
681 143.07 atmosphere 1000 90 < th dose independent sin 12 NA
714 143.25 wind 1 30 < th dose independent rect. 14 10
740 143.32 wind 1 30 < th dose dependent sin 18 NA
758 143.42 atmosphere 1000 90 < th dose independent rect. 22 17
773 143.50 atmosphere 1000 10 > th dose independent sin 11 NA
778 143.53 atmosphere 1000 10 < th dose independent sin 11 NA
823 143.70 wind 1 30 < th dose independent rect. 12 12
861 143.81 atmosphere 1000 10 < th dose dependent rect. 23 9
950 144.03 atmosphere 1000 10 < th dose independent rect. 16 9