Os07g0649400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0649400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.43 | 0.359 | 7.17 | 0.842 | 0.16 | -0.782 | -0.283 | 0.109 | -0.0041 | 2.15 | 22.54 | 721 | -- | -- |
| 58.45 | 0.356 | 7.17 | 0.849 | 0.164 | -0.802 | -0.293 | -- | -0.00334 | 2.11 | 22.5 | 720 | -- | -- |
| 58.71 | 0.357 | 7.17 | 0.833 | 0.152 | -0.763 | -- | 0.224 | -0.00768 | 2.23 | 22.66 | 781 | -- | -- |
| 58.77 | 0.357 | 7.16 | 0.859 | 0.15 | -0.801 | -- | -- | -0.00317 | 2.3 | 22.6 | 781 | -- | -- |
| 59.98 | 0.361 | 7.17 | 0.826 | -- | -0.794 | -- | 0.186 | -0.0232 | -- | 22.79 | 851 | -- | -- |
| 65.93 | 0.381 | 7.14 | 1.05 | 0.211 | -- | -0.351 | -- | 0.114 | 1.01 | -- | -- | -- | -- |
| 66.44 | 0.382 | 7.14 | 1.07 | 0.211 | -- | -- | -- | 0.116 | 1.03 | -- | -- | -- | -- |
| 59.97 | 0.361 | 7.17 | 0.844 | -- | -0.867 | -- | -- | -0.0104 | -- | 22.64 | 873 | -- | -- |
| 66.63 | 0.38 | 7.2 | -- | 0.262 | -0.862 | -- | -- | -0.0916 | 23.9 | 21.08 | 47104 | -- | -- |
| 69.22 | 0.389 | 7.14 | 1.08 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 96.47 | 0.459 | 7.17 | -- | 0.229 | -- | -- | -- | -0.00288 | 1.23 | -- | -- | -- | -- |
| 67.46 | 0.383 | 7.21 | -- | -- | -0.947 | -- | -- | -0.214 | -- | 21.31 | 47520 | -- | -- |
| 99.73 | 0.466 | 7.16 | -- | -- | -- | -- | -- | 0.00081 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 6 | 56.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 19 | 57.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 23 | 57.61 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 31 | 57.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 35 | 57.92 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 21 |
| 39 | 57.96 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 42 | 58.00 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 43 | 58.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 52 | 58.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 76 | 58.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 11 |
| 96 | 58.46 | temperature | 25 | 10 | < th | dose independent | rect. | 2 | 11 |
| 98 | 58.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 13 |
| 118 | 58.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 134 | 58.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 162 | 58.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 19 |
| 174 | 58.87 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 194 | 58.92 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 21 |
| 212 | 58.96 | temperature | 15 | 90 | > th | dose independent | rect. | 3 | 23 |
| 217 | 58.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 232 | 58.99 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 237 | 59.00 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 1 |
| 250 | 59.02 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 20 |
| 262 | 59.03 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 294 | 59.07 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 21 |
| 295 | 59.07 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 22 |
| 296 | 59.07 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 22 |
| 329 | 59.11 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 22 |
| 331 | 59.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 333 | 59.12 | temperature | 25 | 10 | < th | dose independent | rect. | 24 | 13 |
| 334 | 59.12 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 345 | 59.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 384 | 59.16 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 416 | 59.18 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 448 | 59.21 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 23 |
| 497 | 59.27 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 499 | 59.27 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 504 | 59.27 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 522 | 59.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 563 | 59.33 | temperature | 20 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 565 | 59.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 20 |
| 582 | 59.35 | temperature | 20 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 599 | 59.37 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 640 | 59.41 | temperature | 20 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 657 | 59.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 13 |
| 678 | 59.44 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 685 | 59.45 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 711 | 59.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 724 | 59.49 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 4 |
| 768 | 59.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 11 |
| 843 | 59.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 11 |
| 855 | 59.61 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 5 |
| 874 | 59.62 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 3 |